RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 IPO8O15397 1037 aaKnown RBP25.11■■□□□ 1.61
PDLIM2-207ENST00000409417 CTSWP56202 376 aa25.11■■□□□ 1.61
PDLIM2-207ENST00000409417 CCDC93Q567U6 631 aa25.11■■□□□ 1.61
PDLIM2-207ENST00000409417 CC2D2BQ6DHV5 1058 aa25.11■■□□□ 1.61
PDLIM2-207ENST00000409417 C9orf78Q9NZ63 289 aaPredicted RBP25.11■■□□□ 1.61
PDLIM2-207ENST00000409417 OLFM4Q6UX06 510 aa25.1■■□□□ 1.61
PDLIM2-207ENST00000409417 RTKN2Q8IZC4 609 aa25.09■■□□□ 1.61
PDLIM2-207ENST00000409417 TTLL11Q8NHH1 800 aa25.09■■□□□ 1.61
PDLIM2-207ENST00000409417 ATP6V0A2Q9Y487 856 aa25.09■■□□□ 1.61
PDLIM2-207ENST00000409417 LTBP3Q9NS15 1303 aa25.08■■□□□ 1.61
PDLIM2-207ENST00000409417 CCT4P50991 539 aaKnown RBP25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 RASSF7Q02833 373 aa25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 GRIPAP1Q4V328 841 aa25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 TMC4Q7Z404 712 aa25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 FRAT1Q92837 279 aaPredicted RBP25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 TAOK3Q9H2K8 898 aa25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 CACNA1SQ13698 1873 aa25.08■■□□□ 1.6
PDLIM2-207ENST00000409417 UTYO14607 1347 aa25.07■■□□□ 1.6
PDLIM2-207ENST00000409417 LMNB1P20700 586 aa25.07■■□□□ 1.6
PDLIM2-207ENST00000409417 ATF7IPQ6VMQ6 1270 aa25.07■■□□□ 1.6
PDLIM2-207ENST00000409417 CELF1Q92879 486 aaKnown RBP25.07■■□□□ 1.6
PDLIM2-207ENST00000409417 CCDC85AQ96PX6 553 aaPredicted RBP25.07■■□□□ 1.6
PDLIM2-207ENST00000409417 TMX4Q9H1E5 349 aaPredicted RBP25.07■■□□□ 1.6
PDLIM2-207ENST00000409417 TRIM27P14373 513 aa25.06■■□□□ 1.6
PDLIM2-207ENST00000409417 RPS8P62241 208 aaKnown RBP25.06■■□□□ 1.6
PDLIM2-207ENST00000409417 C9orf131Q5VYM1 1079 aa25.06■■□□□ 1.6
PDLIM2-207ENST00000409417 SP8Q8IXZ3 490 aa25.06■■□□□ 1.6
PDLIM2-207ENST00000409417 YTHDC1Q96MU7 727 aaKnown RBP25.06■■□□□ 1.6
PDLIM2-207ENST00000409417 SEC31BQ9NQW1 1179 aa25.06■■□□□ 1.6
PDLIM2-207ENST00000409417 CSF1RP07333 972 aa25.05■■□□□ 1.6
PDLIM2-207ENST00000409417 RTL9Q8NET4 1388 aa25.05■■□□□ 1.6
PDLIM2-207ENST00000409417 NBPF7P0C2Y1 421 aaPredicted RBP25.04■■□□□ 1.6
PDLIM2-207ENST00000409417 USP44Q9H0E7 712 aa25.04■■□□□ 1.6
PDLIM2-207ENST00000409417 GREM2Q9H772 168 aa25.04■■□□□ 1.6
PDLIM2-207ENST00000409417 FER1L6Q2WGJ9 1857 aa25.04■■□□□ 1.6
PDLIM2-207ENST00000409417 SNED1Q8TER0 1413 aa25.04■■□□□ 1.6
PDLIM2-207ENST00000409417 PRELPP51888 382 aa25.03■■□□□ 1.6
PDLIM2-207ENST00000409417 FOXO4P98177 505 aa25.03■■□□□ 1.6
PDLIM2-207ENST00000409417 FKBP4Q02790 459 aaKnown RBP eCLIP25.03■■□□□ 1.6
PDLIM2-207ENST00000409417 ZKSCAN2Q63HK3 967 aa25.03■■□□□ 1.6
PDLIM2-207ENST00000409417 RNF181Q9P0P0 153 aa25.03■■□□□ 1.6
PDLIM2-207ENST00000409417 SLC51AQ86UW1 340 aa25.02■■□□□ 1.6
PDLIM2-207ENST00000409417 CDC5LQ99459 802 aaKnown RBP25.02■■□□□ 1.6
PDLIM2-207ENST00000409417 PSMD1Q99460 953 aa25.02■■□□□ 1.6
PDLIM2-207ENST00000409417 INTS3Q68E01 1043 aaKnown RBP25.02■■□□□ 1.6
PDLIM2-207ENST00000409417 EPHA10Q5JZY3 1008 aa25.01■■□□□ 1.59
PDLIM2-207ENST00000409417 TAF1P21675 1872 aa25■■□□□ 1.59
PDLIM2-207ENST00000409417 FAM161AQ3B820 660 aa25■■□□□ 1.59
PDLIM2-207ENST00000409417 ANKRD18AQ8IVF6 992 aa25■■□□□ 1.59
PDLIM2-207ENST00000409417 SUCLG2Q96I99 432 aa25■■□□□ 1.59
PDLIM2-207ENST00000409417 RCAN3Q9UKA8 241 aa25■■□□□ 1.59
PDLIM2-207ENST00000409417 MYH3P11055 1940 aa25■■□□□ 1.59
PDLIM2-207ENST00000409417 SBF1O95248 1867 aa24.99■■□□□ 1.59
PDLIM2-207ENST00000409417 ITGA6P23229 1130 aa24.99■■□□□ 1.59
PDLIM2-207ENST00000409417 LMBR1LQ6UX01 489 aa24.99■■□□□ 1.59
PDLIM2-207ENST00000409417 KAZALD1Q96I82 304 aa24.99■■□□□ 1.59
PDLIM2-207ENST00000409417 ZNF277Q9NRM2 450 aaPredicted RBP24.99■■□□□ 1.59
PDLIM2-207ENST00000409417 COL4A1P02462 1669 aa24.98■■□□□ 1.59
PDLIM2-207ENST00000409417 MPNDQ8N594 471 aa24.98■■□□□ 1.59
PDLIM2-207ENST00000409417 CLUAP1Q96AJ1 413 aa24.98■■□□□ 1.59
PDLIM2-207ENST00000409417 DPP8Q6V1X1 898 aaPredicted RBP24.97■■□□□ 1.59
PDLIM2-207ENST00000409417 RTFDC1Q9BY42 306 aaPredicted RBP24.97■■□□□ 1.59
PDLIM2-207ENST00000409417 TNNQ9UQP3 1299 aa24.97■■□□□ 1.59
PDLIM2-207ENST00000409417 ZC3H4Q9UPT8 1303 aaKnown RBP24.97■■□□□ 1.59
PDLIM2-207ENST00000409417 IFIT5Q13325 482 aaKnown RBP24.96■■□□□ 1.59
PDLIM2-207ENST00000409417 BSDC1Q9NW68 430 aaPredicted RBP24.96■■□□□ 1.59
PDLIM2-207ENST00000409417 ANKRD18BA2A2Z9 1011 aa24.96■■□□□ 1.59
PDLIM2-207ENST00000409417 ZNF784Q8NCA9 323 aaPredicted RBP24.96■■□□□ 1.59
PDLIM2-207ENST00000409417 BICC1Q9H694 974 aaKnown RBP24.96■■□□□ 1.59
PDLIM2-207ENST00000409417 CHMP3Q9Y3E7 222 aa24.96■■□□□ 1.59
PDLIM2-207ENST00000409417 UBTFL1P0CB47 393 aaPredicted RBP24.95■■□□□ 1.58
PDLIM2-207ENST00000409417 IGHMBP2P38935 993 aaKnown RBP24.95■■□□□ 1.58
PDLIM2-207ENST00000409417 RABL6Q3YEC7 729 aaPredicted RBP24.95■■□□□ 1.58
PDLIM2-207ENST00000409417 SUPT20HQ8NEM7 779 aa24.95■■□□□ 1.58
PDLIM2-207ENST00000409417 NSFL1CQ9UNZ2 370 aaKnown RBP24.95■■□□□ 1.58
PDLIM2-207ENST00000409417 IARSP41252 1262 aaKnown RBP24.94■■□□□ 1.58
PDLIM2-207ENST00000409417 FTSJ3Q8IY81 847 aaKnown RBP24.94■■□□□ 1.58
PDLIM2-207ENST00000409417 HDAC5Q9UQL6 1122 aa24.94■■□□□ 1.58
PDLIM2-207ENST00000409417 LRRC37AA6NMS7 1700 aa24.94■■□□□ 1.58
PDLIM2-207ENST00000409417 GPSM2P81274 684 aa24.93■■□□□ 1.58
PDLIM2-207ENST00000409417 CCDC57Q2TAC2 916 aa24.93■■□□□ 1.58
PDLIM2-207ENST00000409417 DZIP1LQ8IYY4 767 aaKnown RBP24.93■■□□□ 1.58
PDLIM2-207ENST00000409417 ANKRD44Q8N8A2 993 aa24.93■■□□□ 1.58
PDLIM2-207ENST00000409417 VPS33BQ9H267 617 aa24.93■■□□□ 1.58
PDLIM2-207ENST00000409417 TMEM57Q8N5G2 664 aa24.92■■□□□ 1.58
PDLIM2-207ENST00000409417 MPHOSPH8Q99549 860 aa24.92■■□□□ 1.58
PDLIM2-207ENST00000409417 MEIS3Q99687 375 aa24.92■■□□□ 1.58
PDLIM2-207ENST00000409417 PODXL2Q9NZ53 605 aa24.92■■□□□ 1.58
PDLIM2-207ENST00000409417 ANKIB1Q9P2G1 1089 aa24.91■■□□□ 1.58
PDLIM2-207ENST00000409417 MINPP1Q9UNW1 487 aa24.91■■□□□ 1.58
PDLIM2-207ENST00000409417 GNAI3P08754 354 aa24.9■■□□□ 1.58
PDLIM2-207ENST00000409417 CCDC88AQ3V6T2 1871 aa24.9■■□□□ 1.58
PDLIM2-207ENST00000409417 RLBP1P12271 317 aa24.89■■□□□ 1.58
PDLIM2-207ENST00000409417 LARGE2Q8N3Y3 721 aa24.89■■□□□ 1.58
PDLIM2-207ENST00000409417 JDP2Q8WYK2 163 aa24.89■■□□□ 1.58
PDLIM2-207ENST00000409417 POLLQ9UGP5 575 aa24.89■■□□□ 1.58
PDLIM2-207ENST00000409417 XDHP47989 1333 aa24.89■■□□□ 1.57
PDLIM2-207ENST00000409417 PPIP5K2O43314 1243 aa24.89■■□□□ 1.57
PDLIM2-207ENST00000409417 MS4A1P11836 297 aa24.89■■□□□ 1.57
PDLIM2-207ENST00000409417 KIAA2012Q0VF49 1180 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms