RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 PUS3Q9BZE2 481 aaKnown RBP4.56□□□□□ -1.68
RTN4-208ENST00000404909 CCDC8Q9H0W5 538 aaPredicted RBP4.56□□□□□ -1.68
RTN4-208ENST00000404909 RBM19Q9Y4C8 960 aaKnown RBP4.56□□□□□ -1.68
RTN4-208ENST00000404909 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.56□□□□□ -1.68
RTN4-208ENST00000404909 TFCP2Q12800 502 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 LRRC24Q50LG9 513 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 ZNF831Q5JPB2 1677 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 ANKRD18BA2A2Z9 1011 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 CSF1RP07333 972 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 NFIXQ14938 502 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 BMP2KLQ5H9B9 411 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 TPTE2Q6XPS3 522 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 LDHAL6AQ6ZMR3 332 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 CICQ96RK0 1608 aaPredicted RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 SRCAPQ6ZRS2 3230 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 TRIM6-TRIM34B2RNG4 842 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 EYA2O00167 538 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 MAP4K4O95819 1239 aaPredicted RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 GYS1P13807 737 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 HSP90B1P14625 803 aaKnown RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 GSPT1P15170 499 aaKnown RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 HMGB2P26583 209 aaKnown RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 CCDC152Q4G0S7 254 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 TTC22Q5TAA0 569 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 EAF2Q96CJ1 260 aaPredicted RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 NEUROD6Q96NK8 337 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 NYXQ9GZU5 481 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 SEC31BQ9NQW1 1179 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 CNNM1Q9NRU3 951 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 RREB1Q92766 1687 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 TAF1LQ8IZX4 1826 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 IL15P40933 162 aaPredicted RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 BAG6P46379 1132 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 C3orf67Q6ZVT6 689 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 COL23A1Q86Y22 540 aaPredicted RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 RILPL2Q969X0 211 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 AKT1S1Q96B36 256 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 TLR7Q9NYK1 1049 aaKnown RBP4.55□□□□□ -1.68
RTN4-208ENST00000404909 MSL1Q68DK7 614 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 ATG9AQ7Z3C6 839 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 CNBD1Q8NA66 436 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 GPATCH3Q96I76 525 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 CAMKK2Q96RR4 588 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 MPHOSPH8Q99549 860 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 CEP126Q9P2H0 1117 aa4.55□□□□□ -1.68
RTN4-208ENST00000404909 SEC24BO95487 1268 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 SDSP20132 328 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 TIMM10P62072 90 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 TNNI3KQ59H18 835 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 METTL24Q5JXM2 366 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 NLRP3Q96P20 1036 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 ANO8Q9HCE9 1232 aaPredicted RBP4.54□□□□□ -1.68
RTN4-208ENST00000404909 FPGT-TNNI3KV9GXZ4 949 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 ABCC12Q96J65 1359 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 RGL2O15211 777 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 HELBQ8NG08 1087 aaPredicted RBP4.54□□□□□ -1.68
RTN4-208ENST00000404909 ECHDC1Q9NTX5 307 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 STK32BQ9NY57 414 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 CARMIL3Q8ND23 1372 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 ANKRD36CQ5JPF3 1778 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 SERPINB2P05120 415 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 IGHMBP2P38935 993 aaKnown RBP4.54□□□□□ -1.68
RTN4-208ENST00000404909 MFAP1P55081 439 aaKnown RBP4.54□□□□□ -1.68
RTN4-208ENST00000404909 DBNDD2Q9BQY9 259 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 OSBPL3Q9H4L5 887 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 DBNLQ9UJU6 430 aaKnown RBP4.54□□□□□ -1.68
RTN4-208ENST00000404909 SALL3Q9BXA9 1300 aa4.54□□□□□ -1.68
RTN4-208ENST00000404909 ERC2O15083 957 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 CIAO1O76071 339 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 SLC15A2Q16348 729 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 GORABQ5T7V8 394 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 TBC1D9Q6ZT07 1266 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 FLAD1Q8NFF5 587 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 BOLA2Q9H3K6 86 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 STAP2Q9UGK3 403 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 PNPLA7Q6ZV29 1317 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 A0A1B0GUL7 405 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 CDC45O75419 566 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 TAF5LO75529 589 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 GLRX3O76003 335 aaKnown RBP4.53□□□□□ -1.68
RTN4-208ENST00000404909 ST5P78524 1137 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 DDR1Q08345 913 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 PRR5LQ6MZQ0 368 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 NLGN1Q8N2Q7 840 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 PI4K2BQ8TCG2 481 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 CDC5LQ99459 802 aaKnown RBP4.53□□□□□ -1.68
RTN4-208ENST00000404909 UPF2Q9HAU5 1272 aaKnown RBP4.53□□□□□ -1.68
RTN4-208ENST00000404909 RIPOR2Q9Y4F9 1068 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 SNAP23O00161 211 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 MMP10P09238 476 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 SLC10A5Q5PT55 438 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 CASC1Q6TDU7 716 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 ANKRD18AQ8IVF6 992 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 NDUFB9Q9Y6M9 179 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 UBR3Q6ZT12 1888 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 BCORQ6W2J9 1755 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 TTC41PQ6P2S7 1318 aa4.53□□□□□ -1.68
RTN4-208ENST00000404909 POLRMTO00411 1230 aaKnown RBP4.53□□□□□ -1.69
RTN4-208ENST00000404909 TM4SF1P30408 202 aa4.53□□□□□ -1.69
RTN4-208ENST00000404909 SF3B3Q15393 1217 aaKnown RBP4.53□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms