RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 COG6Q9Y2V7 657 aa36.91■■■■□ 3.5
USP42-202ENST00000404008 GNAI3P08754 354 aa36.9■■■■□ 3.5
USP42-202ENST00000404008 FOXO4P98177 505 aa36.9■■■■□ 3.5
USP42-202ENST00000404008 STYK1Q6J9G0 422 aa36.9■■■■□ 3.5
USP42-202ENST00000404008 RPGRQ92834 1020 aaKnown RBP36.9■■■■□ 3.5
USP42-202ENST00000404008 TAF1P21675 1872 aa36.89■■■■□ 3.5
USP42-202ENST00000404008 HOXA10P31260 410 aaPredicted RBP36.89■■■■□ 3.5
USP42-202ENST00000404008 EPHA10Q5JZY3 1008 aa36.89■■■■□ 3.5
USP42-202ENST00000404008 TTLL11Q8NHH1 800 aa36.88■■■■□ 3.49
USP42-202ENST00000404008 ZBTB7BO15156 539 aaPredicted RBP36.87■■■■□ 3.49
USP42-202ENST00000404008 ZNF622Q969S3 477 aaKnown RBP eCLIP36.87■■■■□ 3.49
USP42-202ENST00000404008 CSF1RP07333 972 aa36.86■■■■□ 3.49
USP42-202ENST00000404008 CCDC152Q4G0S7 254 aa36.86■■■■□ 3.49
USP42-202ENST00000404008 PIM2Q9P1W9 311 aa36.86■■■■□ 3.49
USP42-202ENST00000404008 RBM17Q96I25 401 aaKnown RBP36.85■■■■□ 3.49
USP42-202ENST00000404008 BICC1Q9H694 974 aaKnown RBP36.85■■■■□ 3.49
USP42-202ENST00000404008 DDX19BQ9UMR2 479 aa36.85■■■■□ 3.49
USP42-202ENST00000404008 RTL9Q8NET4 1388 aa36.84■■■■□ 3.49
USP42-202ENST00000404008 SLX4Q8IY92 1834 aa36.84■■■■□ 3.49
USP42-202ENST00000404008 HDAC5Q9UQL6 1122 aa36.84■■■■□ 3.49
USP42-202ENST00000404008 CENPBP07199 599 aaPredicted RBP36.83■■■■□ 3.49
USP42-202ENST00000404008 CCDC85AQ96PX6 553 aaPredicted RBP36.83■■■■□ 3.49
USP42-202ENST00000404008 CRAMP1Q96RY5 1269 aa36.83■■■■□ 3.49
USP42-202ENST00000404008 COL4A1P02462 1669 aa36.83■■■■□ 3.49
USP42-202ENST00000404008 ARFGEF1Q9Y6D6 1849 aa36.83■■■■□ 3.49
USP42-202ENST00000404008 DDX46Q7L014 1031 aaKnown RBP36.82■■■■□ 3.49
USP42-202ENST00000404008 CNKSR1Q969H4 720 aa36.82■■■■□ 3.49
USP42-202ENST00000404008 LRRFIP2Q9Y608 721 aaKnown RBP36.82■■■■□ 3.49
USP42-202ENST00000404008 ALDH1B1P30837 517 aa36.81■■■■□ 3.48
USP42-202ENST00000404008 RABL6Q3YEC7 729 aaPredicted RBP36.81■■■■□ 3.48
USP42-202ENST00000404008 LMBR1LQ6UX01 489 aa36.81■■■■□ 3.48
USP42-202ENST00000404008 TTLL6Q8N841 843 aa36.81■■■■□ 3.48
USP42-202ENST00000404008 ANKRD44Q8N8A2 993 aa36.81■■■■□ 3.48
USP42-202ENST00000404008 GREM2Q9H772 168 aa36.81■■■■□ 3.48
USP42-202ENST00000404008 WWC3Q9ULE0 1092 aa36.8■■■■□ 3.48
USP42-202ENST00000404008 SPEF2Q9C093 1822 aa36.8■■■■□ 3.48
USP42-202ENST00000404008 GNAI2P04899 355 aa36.79■■■■□ 3.48
USP42-202ENST00000404008 FAM161AQ3B820 660 aa36.78■■■■□ 3.48
USP42-202ENST00000404008 DALRD3Q5D0E6 543 aaKnown RBP36.78■■■■□ 3.48
USP42-202ENST00000404008 SEC31BQ9NQW1 1179 aa36.78■■■■□ 3.48
USP42-202ENST00000404008 PRPF40BQ6NWY9 871 aaKnown RBP36.78■■■■□ 3.48
USP42-202ENST00000404008 GRAPQ13588 217 aa36.77■■■■□ 3.48
USP42-202ENST00000404008 GRAPLQ8TC17 118 aaPredicted RBP36.77■■■■□ 3.48
USP42-202ENST00000404008 CHMP4BQ9H444 224 aaKnown RBP36.76■■■■□ 3.47
USP42-202ENST00000404008 CHMP3Q9Y3E7 222 aa36.76■■■■□ 3.47
USP42-202ENST00000404008 ITGA6P23229 1130 aa36.75■■■■□ 3.47
USP42-202ENST00000404008 CELF1Q92879 486 aaKnown RBP36.75■■■■□ 3.47
USP42-202ENST00000404008 ZBTB40Q9NUA8 1239 aa36.75■■■■□ 3.47
USP42-202ENST00000404008 BCS1LQ9Y276 419 aa36.74■■■■□ 3.47
USP42-202ENST00000404008 LRRC37AA6NMS7 1700 aa36.72■■■■□ 3.47
USP42-202ENST00000404008 IFIT5Q13325 482 aaKnown RBP36.72■■■■□ 3.47
USP42-202ENST00000404008 CRBNQ96SW2 442 aa36.72■■■■□ 3.47
USP42-202ENST00000404008 C1orf115Q9H7X2 142 aa36.72■■■■□ 3.47
USP42-202ENST00000404008 BBOX1O75936 387 aa36.71■■■■□ 3.47
USP42-202ENST00000404008 CDC5LQ99459 802 aaKnown RBP36.71■■■■□ 3.47
USP42-202ENST00000404008 ANKRD18BA2A2Z9 1011 aa36.7■■■■□ 3.47
USP42-202ENST00000404008 PPEF1O14829 653 aaPredicted RBP36.7■■■■□ 3.47
USP42-202ENST00000404008 RPS8P62241 208 aaKnown RBP36.7■■■■□ 3.47
USP42-202ENST00000404008 CCDC57Q2TAC2 916 aa36.7■■■■□ 3.47
USP42-202ENST00000404008 UTRNP46939 3433 aa36.7■■■■□ 3.47
USP42-202ENST00000404008 C7orf43Q8WVR3 580 aa36.69■■■■□ 3.46
USP42-202ENST00000404008 YBX3P16989 372 aaKnown RBP eCLIP36.68■■■■□ 3.46
USP42-202ENST00000404008 MTX1Q13505 466 aa36.68■■■■□ 3.46
USP42-202ENST00000404008 ANKRD18AQ8IVF6 992 aa36.68■■■■□ 3.46
USP42-202ENST00000404008 PELP1Q8IZL8 1130 aaKnown RBP36.68■■■■□ 3.46
USP42-202ENST00000404008 TMC4Q7Z404 712 aa36.66■■■■□ 3.46
USP42-202ENST00000404008 C21orf2O43822 256 aa36.66■■■■□ 3.46
USP42-202ENST00000404008 ZNF219Q9P2Y4 722 aaPredicted RBP36.66■■■■□ 3.46
USP42-202ENST00000404008 GPR162Q16538 588 aa36.65■■■■□ 3.46
USP42-202ENST00000404008 ATP6V0A2Q9Y487 856 aa36.65■■■■□ 3.46
USP42-202ENST00000404008 FER1L6Q2WGJ9 1857 aa36.64■■■■□ 3.46
USP42-202ENST00000404008 SLC51AQ86UW1 340 aa36.64■■■■□ 3.46
USP42-202ENST00000404008 SRGAP3O43295 1099 aa36.63■■■■□ 3.45
USP42-202ENST00000404008 IGHMBP2P38935 993 aaKnown RBP36.63■■■■□ 3.45
USP42-202ENST00000404008 RFX5P48382 616 aaPredicted RBP36.63■■■■□ 3.45
USP42-202ENST00000404008 OLFM4Q6UX06 510 aa36.63■■■■□ 3.45
USP42-202ENST00000404008 SP8Q8IXZ3 490 aa36.63■■■■□ 3.45
USP42-202ENST00000404008 ZNF594Q96JF6 807 aaPredicted RBP36.63■■■■□ 3.45
USP42-202ENST00000404008 TAF7LQ5H9L4 462 aa36.62■■■■□ 3.45
USP42-202ENST00000404008 CEP85Q6P2H3 762 aa36.62■■■■□ 3.45
USP42-202ENST00000404008 BSDC1Q9NW68 430 aaPredicted RBP36.62■■■■□ 3.45
USP42-202ENST00000404008 A0A1B0GUL6 1792 aa36.61■■■■□ 3.45
USP42-202ENST00000404008 SOGA3Q5TF21 947 aa36.61■■■■□ 3.45
USP42-202ENST00000404008 SNED1Q8TER0 1413 aa36.6■■■■□ 3.45
USP42-202ENST00000404008 PNMA6EA0A0J9YXQ4 647 aa36.6■■■■□ 3.45
USP42-202ENST00000404008 ATP8B2P98198 1209 aa36.6■■■■□ 3.45
USP42-202ENST00000404008 MPHOSPH8Q99549 860 aa36.6■■■■□ 3.45
USP42-202ENST00000404008 LTBP1Q14766 1721 aa36.59■■■■□ 3.45
USP42-202ENST00000404008 IRX6P78412 446 aaPredicted RBP36.59■■■■□ 3.45
USP42-202ENST00000404008 CC2D2BQ6DHV5 1058 aa36.59■■■■□ 3.45
USP42-202ENST00000404008 KLHDC4Q8TBB5 520 aa36.59■■■■□ 3.45
USP42-202ENST00000404008 PTPN12Q05209 780 aaKnown RBP36.57■■■■□ 3.45
USP42-202ENST00000404008 CCDC93Q567U6 631 aa36.57■■■■□ 3.45
USP42-202ENST00000404008 EXOC6Q8TAG9 804 aa36.57■■■■□ 3.45
USP42-202ENST00000404008 TMX4Q9H1E5 349 aaPredicted RBP36.57■■■■□ 3.45
USP42-202ENST00000404008 LDHAL6AQ6ZMR3 332 aa36.56■■■■□ 3.44
USP42-202ENST00000404008 SSH3Q8TE77 659 aa36.56■■■■□ 3.44
USP42-202ENST00000404008 POLA2Q14181 598 aa36.55■■■■□ 3.44
USP42-202ENST00000404008 RPAP2Q8IXW5 612 aaPredicted RBP36.55■■■■□ 3.44
USP42-202ENST00000404008 GRIN3BO60391 1043 aa36.54■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms