RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GPRC5DQ9NZD1 345 aa37.13■■■■□ 3.53
HMGB1-205ENST00000399494 CHPF2Q9P2E5 772 aa37.13■■■■□ 3.53
HMGB1-205ENST00000399494 ABT1Q9ULW3 272 aaKnown RBP37.13■■■■□ 3.53
HMGB1-205ENST00000399494 LAMB2P55268 1798 aa37.13■■■■□ 3.53
HMGB1-205ENST00000399494 WDR33Q9C0J8 1336 aaKnown RBP37.12■■■■□ 3.53
HMGB1-205ENST00000399494 GRAPQ13588 217 aa37.11■■■■□ 3.53
HMGB1-205ENST00000399494 GRAPLQ8TC17 118 aaPredicted RBP37.11■■■■□ 3.53
HMGB1-205ENST00000399494 ADARB2Q9NS39 739 aaKnown RBP37.1■■■■□ 3.53
HMGB1-205ENST00000399494 KIAA2012Q0VF49 1180 aa37.09■■■■□ 3.53
HMGB1-205ENST00000399494 PLBD2Q8NHP8 589 aa37.09■■■■□ 3.53
HMGB1-205ENST00000399494 HDGFL1Q5TGJ6 251 aa37.08■■■■□ 3.53
HMGB1-205ENST00000399494 CST9Q5W186 159 aa37.08■■■■□ 3.53
HMGB1-205ENST00000399494 ANKRD13DQ6ZTN6 518 aa37.08■■■■□ 3.53
HMGB1-205ENST00000399494 ZNF428Q96B54 188 aa37.08■■■■□ 3.53
HMGB1-205ENST00000399494 ADAMTS8Q9UP79 889 aa37.08■■■■□ 3.53
HMGB1-205ENST00000399494 TRAF5O00463 557 aa37.07■■■■□ 3.52
HMGB1-205ENST00000399494 HOXB7P09629 217 aa37.07■■■■□ 3.52
HMGB1-205ENST00000399494 GMPSP49915 693 aaPredicted RBP37.06■■■■□ 3.52
HMGB1-205ENST00000399494 LBX1P52954 281 aa37.05■■■■□ 3.52
HMGB1-205ENST00000399494 CIAPIN1Q6FI81 312 aa37.05■■■■□ 3.52
HMGB1-205ENST00000399494 ISCA1Q9BUE6 129 aa37.05■■■■□ 3.52
HMGB1-205ENST00000399494 DBF4Q9UBU7 674 aaPredicted RBP37.05■■■■□ 3.52
HMGB1-205ENST00000399494 MAP2K1Q02750 393 aaPredicted RBP37.04■■■■□ 3.52
HMGB1-205ENST00000399494 TMC4Q7Z404 712 aa37.04■■■■□ 3.52
HMGB1-205ENST00000399494 CFAP44Q96MT7 982 aa37.03■■■■□ 3.52
HMGB1-205ENST00000399494 TAF1P21675 1872 aa37.03■■■■□ 3.52
HMGB1-205ENST00000399494 RAD17O75943 681 aa37.02■■■■□ 3.52
HMGB1-205ENST00000399494 TNIP1Q15025 636 aa37.02■■■■□ 3.52
HMGB1-205ENST00000399494 FAM89AQ96GI7 184 aa37.02■■■■□ 3.52
HMGB1-205ENST00000399494 PGAP2Q9UHJ9 254 aa37.02■■■■□ 3.52
HMGB1-205ENST00000399494 ATP5J2-PTCD1G3V325 749 aa37■■■■□ 3.51
HMGB1-205ENST00000399494 SF3B3Q15393 1217 aaKnown RBP37■■■■□ 3.51
HMGB1-205ENST00000399494 CAPNS2Q96L46 248 aa37■■■■□ 3.51
HMGB1-205ENST00000399494 HYPKQ9NX55 129 aa37■■■■□ 3.51
HMGB1-205ENST00000399494 TLL2Q9Y6L7 1015 aa37■■■■□ 3.51
HMGB1-205ENST00000399494 YDJCA8MPS7 323 aa36.99■■■■□ 3.51
HMGB1-205ENST00000399494 HSPA8P11142 646 aaKnown RBP36.99■■■■□ 3.51
HMGB1-205ENST00000399494 DUSP27Q5VZP5 1158 aa36.99■■■■□ 3.51
HMGB1-205ENST00000399494 BCL2L13Q9BXK5 485 aa36.99■■■■□ 3.51
HMGB1-205ENST00000399494 CDHR2Q9BYE9 1310 aa36.99■■■■□ 3.51
HMGB1-205ENST00000399494 ECE1P42892 770 aa36.98■■■■□ 3.51
HMGB1-205ENST00000399494 HIRAP54198 1017 aaPredicted RBP36.98■■■■□ 3.51
HMGB1-205ENST00000399494 CELF1Q92879 486 aaKnown RBP36.98■■■■□ 3.51
HMGB1-205ENST00000399494 TRPM7Q96QT4 1865 aa36.98■■■■□ 3.51
HMGB1-205ENST00000399494 TRIM28Q13263 835 aaKnown RBP36.97■■■■□ 3.51
HMGB1-205ENST00000399494 CCDC184Q52MB2 194 aa36.97■■■■□ 3.51
HMGB1-205ENST00000399494 CYP4F22Q6NT55 531 aa36.97■■■■□ 3.51
HMGB1-205ENST00000399494 DDX60Q8IY21 1712 aaKnown RBP36.96■■■■□ 3.51
HMGB1-205ENST00000399494 DUOX1Q9NRD9 1551 aa36.96■■■■□ 3.51
HMGB1-205ENST00000399494 PAXIP1Q6ZW49 1069 aaPredicted RBP36.96■■■■□ 3.51
HMGB1-205ENST00000399494 GPR101Q96P66 508 aaPredicted RBP36.96■■■■□ 3.51
HMGB1-205ENST00000399494 MRS2Q9HD23 443 aa36.96■■■■□ 3.51
HMGB1-205ENST00000399494 MBIPQ9NS73 344 aa36.96■■■■□ 3.51
HMGB1-205ENST00000399494 ZC3H15Q8WU90 426 aaKnown RBP36.95■■■■□ 3.51
HMGB1-205ENST00000399494 GLIS2Q9BZE0 524 aaPredicted RBP36.95■■■■□ 3.51
HMGB1-205ENST00000399494 CNOT7Q9UIV1 285 aaKnown RBP36.95■■■■□ 3.51
HMGB1-205ENST00000399494 ZNF853P0CG23 659 aa36.94■■■■□ 3.5
HMGB1-205ENST00000399494 WASHC4Q2M389 1173 aa36.93■■■■□ 3.5
HMGB1-205ENST00000399494 NSFL1CQ9UNZ2 370 aaKnown RBP36.93■■■■□ 3.5
HMGB1-205ENST00000399494 LRRC37AA6NMS7 1700 aa36.93■■■■□ 3.5
HMGB1-205ENST00000399494 CELF2O95319 508 aaKnown RBP36.92■■■■□ 3.5
HMGB1-205ENST00000399494 GRM1Q13255 1194 aa36.92■■■■□ 3.5
HMGB1-205ENST00000399494 RTL5Q5HYW3 569 aaPredicted RBP36.92■■■■□ 3.5
HMGB1-205ENST00000399494 TRPM4Q8TD43 1214 aa36.92■■■■□ 3.5
HMGB1-205ENST00000399494 SHTN1A0MZ66 631 aa36.91■■■■□ 3.5
HMGB1-205ENST00000399494 SAPCD2Q86UD0 394 aa36.91■■■■□ 3.5
HMGB1-205ENST00000399494 POLLQ9UGP5 575 aa36.91■■■■□ 3.5
HMGB1-205ENST00000399494 THSD7BQ9C0I4 1608 aa36.9■■■■□ 3.5
HMGB1-205ENST00000399494 IRS4O14654 1257 aaPredicted RBP36.9■■■■□ 3.5
HMGB1-205ENST00000399494 H7C1D1 291 aa36.89■■■■□ 3.5
HMGB1-205ENST00000399494 GPSM2P81274 684 aa36.89■■■■□ 3.5
HMGB1-205ENST00000399494 ZBTB12Q9Y330 459 aaPredicted RBP36.89■■■■□ 3.5
HMGB1-205ENST00000399494 CDC37L1Q7L3B6 337 aa36.88■■■■□ 3.49
HMGB1-205ENST00000399494 DPF2Q92785 391 aa36.88■■■■□ 3.49
HMGB1-205ENST00000399494 PHAXQ9H814 394 aaKnown RBP36.88■■■■□ 3.49
HMGB1-205ENST00000399494 COL4A1P02462 1669 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 PSMD14O00487 310 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 RIMBP2O15034 1052 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 MAP2K2P36507 400 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 RPS8P62241 208 aaKnown RBP36.87■■■■□ 3.49
HMGB1-205ENST00000399494 RIC3Q7Z5B4 369 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 MICALL2Q8IY33 904 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 DBNDD1Q9H9R9 158 aa36.87■■■■□ 3.49
HMGB1-205ENST00000399494 C6orf229H3BNL8 230 aa36.86■■■■□ 3.49
HMGB1-205ENST00000399494 AOC2O75106 756 aa36.86■■■■□ 3.49
HMGB1-205ENST00000399494 APAF1O14727 1248 aa36.85■■■■□ 3.49
HMGB1-205ENST00000399494 HHIPL1Q96JK4 782 aa36.85■■■■□ 3.49
HMGB1-205ENST00000399494 BEGAINQ9BUH8 593 aa36.85■■■■□ 3.49
HMGB1-205ENST00000399494 IFT57Q9NWB7 429 aa36.85■■■■□ 3.49
HMGB1-205ENST00000399494 ZBTB38Q8NAP3 1195 aaPredicted RBP36.84■■■■□ 3.49
HMGB1-205ENST00000399494 KCNQ5Q9NR82 932 aa36.84■■■■□ 3.49
HMGB1-205ENST00000399494 ELL2O00472 640 aaPredicted RBP36.83■■■■□ 3.49
HMGB1-205ENST00000399494 GNAI1P63096 354 aa36.83■■■■□ 3.49
HMGB1-205ENST00000399494 GOLGA2Q08379 1002 aa36.83■■■■□ 3.49
HMGB1-205ENST00000399494 SAMD7Q7Z3H4 446 aa36.82■■■■□ 3.48
HMGB1-205ENST00000399494 USP48Q86UV5 1035 aa36.82■■■■□ 3.48
HMGB1-205ENST00000399494 TBC1D16Q8TBP0 767 aa36.82■■■■□ 3.48
HMGB1-205ENST00000399494 EYA3Q99504 573 aa36.82■■■■□ 3.48
HMGB1-205ENST00000399494 DOK7Q18PE1 504 aa36.81■■■■□ 3.48
HMGB1-205ENST00000399494 ZNF408Q9H9D4 720 aa36.81■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms