RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 HELBQ8NG08 1087 aaPredicted RBP9.84□□□□□ -0.83
PTPRD-204ENST00000397606 PDCP20941 246 aa9.84□□□□□ -0.83
PTPRD-204ENST00000397606 VPS53Q5VIR6 699 aa9.84□□□□□ -0.83
PTPRD-204ENST00000397606 SKAP1Q86WV1 359 aa9.84□□□□□ -0.83
PTPRD-204ENST00000397606 IFT172Q9UG01 1749 aa9.84□□□□□ -0.83
PTPRD-204ENST00000397606 VPS37CA5D8V6 355 aaPredicted RBP9.84□□□□□ -0.83
PTPRD-204ENST00000397606 H0YIN7 160 aa9.84□□□□□ -0.83
PTPRD-204ENST00000397606 DDX11L8A8MPP1 907 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 POLR3DP05423 398 aaPredicted RBP9.83□□□□□ -0.84
PTPRD-204ENST00000397606 SDSP20132 328 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 IKQ13123 557 aaPredicted RBP9.83□□□□□ -0.84
PTPRD-204ENST00000397606 PUM3Q15397 648 aaKnown RBP9.83□□□□□ -0.84
PTPRD-204ENST00000397606 KIF1AQ12756 1690 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 CCDC69A6NI79 296 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 CTSWP56202 376 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 TBC1D9Q6ZT07 1266 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 BRMS1Q9HCU9 246 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 PNMA6EA0A0J9YXQ4 647 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 PRPF40BQ6NWY9 871 aaKnown RBP9.83□□□□□ -0.84
PTPRD-204ENST00000397606 RNF41Q9H4P4 317 aaPredicted RBP9.83□□□□□ -0.84
PTPRD-204ENST00000397606 PDRG1Q9NUG6 133 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 MTMR7Q9Y216 660 aa9.83□□□□□ -0.84
PTPRD-204ENST00000397606 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 HMGB1P09429 215 aaKnown RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 PDE6BP35913 854 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 PLCB2Q00722 1185 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 STK11IPQ8N1F8 1099 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 ZSCAN31Q96LW9 406 aaPredicted RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 MROH5Q6ZUA9 1318 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 ADGRB2O60241 1585 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 MINDY4BA8MYZ0 360 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 ZNF213O14771 459 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 C16orf71Q8IYS4 520 aaPredicted RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 TRIM44Q96DX7 344 aaPredicted RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 PAG1Q9NWQ8 432 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 A0A1B0GUL7 405 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 RPS6KA4O75676 772 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 CDK11BP21127 795 aaKnown RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 ALDH1B1P30837 517 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 SSH3Q8TE77 659 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 TULP1O00294 542 aaPredicted RBP9.82□□□□□ -0.84
PTPRD-204ENST00000397606 ATP2B2Q01814 1243 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 TNNI3KQ59H18 835 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 SLC27A3Q5K4L6 730 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 FPGT-TNNI3KV9GXZ4 949 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 NRKQ7Z2Y5 1582 aa9.82□□□□□ -0.84
PTPRD-204ENST00000397606 PTMAP06454 111 aaKnown RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 RPS8P62241 208 aaKnown RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 CLEC4GQ6UXB4 293 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 CRACR2BQ8N4Y2 399 aaPredicted RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 MKNK2Q9HBH9 465 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 FBXO3Q9UK99 471 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 IQSEC3Q9UPP2 1182 aaPredicted RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 TRIM22Q8IYM9 498 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 KLHDC4Q8TBB5 520 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 KCNQ4P56696 695 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 PLEKHM2Q8IWE5 1019 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 JDP2Q8WYK2 163 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 ZNF594Q96JF6 807 aaPredicted RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 CASTP20810 708 aaKnown RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 NAA16Q6N069 864 aaPredicted RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 SAMD1Q6SPF0 538 aaPredicted RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 MARCH10Q8NA82 808 aaPredicted RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 LPIN2Q92539 896 aa9.81□□□□□ -0.84
PTPRD-204ENST00000397606 CRNKL1Q9BZJ0 848 aaKnown RBP9.81□□□□□ -0.84
PTPRD-204ENST00000397606 ADRA2BP18089 450 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 TIMM10P62072 90 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 NKX1-1Q15270 411 aaPredicted RBP9.8□□□□□ -0.84
PTPRD-204ENST00000397606 SLC9C2Q5TAH2 1124 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 OGFOD1Q8N543 542 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 GGA1Q9UJY5 639 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 HDAC9Q9UKV0 1011 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 DENND2AQ9ULE3 1009 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 GOLGA6L6A8MZA4 724 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 K7ELQ4 463 aaPredicted RBP9.8□□□□□ -0.84
PTPRD-204ENST00000397606 CDKL5O76039 1030 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 CYP7A1P22680 504 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 KCNQ2O43526 872 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 UFL1O94874 794 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 FOXD4L6Q3SYB3 417 aaPredicted RBP9.8□□□□□ -0.84
PTPRD-204ENST00000397606 FOXD4L3Q6VB84 417 aaPredicted RBP9.8□□□□□ -0.84
PTPRD-204ENST00000397606 IL27Q8NEV9 243 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 HMG20BQ9P0W2 317 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 MYO1BO43795 1136 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 CYP19A1P11511 503 aaPredicted RBP9.8□□□□□ -0.84
PTPRD-204ENST00000397606 MCMDC2Q4G0Z9 681 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 CCDC24Q8N4L8 307 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 AOX1Q06278 1338 aa9.8□□□□□ -0.84
PTPRD-204ENST00000397606 NLRP10Q86W26 655 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 IQCA1Q86XH1 822 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 CWC22Q9HCG8 908 aaKnown RBP9.79□□□□□ -0.84
PTPRD-204ENST00000397606 KNDC1Q76NI1 1749 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 HIBADHP31937 336 aaKnown RBP9.79□□□□□ -0.84
PTPRD-204ENST00000397606 KIF20BQ96Q89 1820 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 MSL1Q68DK7 614 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 ZNF444Q8N0Y2 327 aaPredicted RBP9.79□□□□□ -0.84
PTPRD-204ENST00000397606 NUP133Q8WUM0 1156 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 DPP8Q6V1X1 898 aaPredicted RBP9.79□□□□□ -0.84
PTPRD-204ENST00000397606 SUPT20HQ8NEM7 779 aa9.79□□□□□ -0.84
PTPRD-204ENST00000397606 XAGE2Q96GT9 111 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms