RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 TXNDC16Q9P2K2 825 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 MAP3K2Q9Y2U5 619 aa8.22□□□□□ -1.09
UPF2-203ENST00000397053 A0A1W2PRG0 241 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 N4BP3O15049 544 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 CALM1P0DP23 149 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 CALM2P0DP24 149 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 CALM3P0DP25 149 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 CASQ1P31415 396 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 ANKRD13DQ6ZTN6 518 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 HS2ST1Q7LGA3 356 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 RAB11FIP4Q86YS3 637 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 ZCRB1Q8TBF4 217 aaKnown RBP8.21□□□□□ -1.09
UPF2-203ENST00000397053 GINS2Q9Y248 185 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 ATP2A1O14983 1001 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 EEF2P13639 858 aaKnown RBP8.21□□□□□ -1.09
UPF2-203ENST00000397053 PLCG2P16885 1265 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 FLIIQ13045 1269 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 HEATR3Q7Z4Q2 680 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 ANKRD24Q8TF21 1146 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 EVI5LQ96CN4 794 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 LIMCH1Q9UPQ0 1083 aa8.21□□□□□ -1.09
UPF2-203ENST00000397053 ZWINTO95229 277 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 PSMC4P43686 418 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 TMTC2Q8N394 836 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 PLEKHH2Q8IVE3 1493 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 NAPAP54920 295 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 IFIT1BQ5T764 474 aaKnown RBP8.21□□□□□ -1.1
UPF2-203ENST00000397053 RNF187Q5TA31 235 aaPredicted RBP8.21□□□□□ -1.1
UPF2-203ENST00000397053 MAATS1Q7Z4T9 603 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 NYXQ9GZU5 481 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 ODF2LQ9ULJ1 636 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 GOLGA6L9A6NEM1 432 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 CCDC77Q9BR77 488 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 JADE2Q9NQC1 790 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 EMILIN1Q9Y6C2 1016 aa8.21□□□□□ -1.1
UPF2-203ENST00000397053 IGF1RP08069 1367 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 BMP15O95972 392 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 SLC8A3P57103 927 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 CLIP2Q9UDT6 1046 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 NPHP3Q7Z494 1330 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 SYCE3A1L190 88 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 PI4KAP2A4QPH2 592 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 RIMBP2O15034 1052 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 CCDC155Q8N6L0 562 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 PI4KAP1Q8N8J0 262 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 SMC1BQ8NDV3 1235 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 JARID2Q92833 1246 aaPredicted RBP8.2□□□□□ -1.1
UPF2-203ENST00000397053 KRT23Q9C075 422 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 TFIP11Q9UBB9 837 aaKnown RBP8.2□□□□□ -1.1
UPF2-203ENST00000397053 SLC4A4Q9Y6R1 1079 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 PPFIA3O75145 1194 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 MCM5P33992 734 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 MXRA7P84157 204 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 CKAP4Q07065 602 aaKnown RBP8.2□□□□□ -1.1
UPF2-203ENST00000397053 AKNAD1Q5T1N1 836 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 CCDC63Q8NA47 563 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 RMND1Q9NWS8 449 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 ZBTB21Q9ULJ3 1066 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 FAM169AQ9Y6X4 670 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 NAIPQ13075 1403 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 KAT6BQ8WYB5 2073 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 ATAD2BQ9ULI0 1458 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 MAP7D1Q3KQU3 841 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 CEP112Q8N8E3 955 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 SH2D4AQ9H788 454 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 TTC12Q9H892 705 aaPredicted RBP8.2□□□□□ -1.1
UPF2-203ENST00000397053 PICK1Q9NRD5 415 aa8.2□□□□□ -1.1
UPF2-203ENST00000397053 WASLO00401 505 aaPredicted RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 ZBTB43O43298 467 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 FAM13AO94988 1023 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 ZFYP08048 801 aaPredicted RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 NACA2Q9H009 215 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 RIOK3O14730 519 aaKnown RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 PRPHP41219 470 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 GRPEL1Q9HAV7 217 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 STAT6P42226 847 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 KRT79Q5XKE5 535 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 MICALCLQ6ZW33 695 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 PRPF31Q8WWY3 499 aaKnown RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 TNPO1Q92973 898 aaKnown RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 CFAP57Q96MR6 1250 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 TIGD1Q96MW7 591 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 RBM25P49756 843 aaKnown RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 ASIC1P78348 528 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 PDCL2Q8N4E4 241 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 SIRT1Q96EB6 747 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 NEK1Q96PY6 1258 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 DDX19AQ9NUU7 478 aaKnown RBP8.19□□□□□ -1.1
UPF2-203ENST00000397053 TMOD4Q9NZQ9 345 aa8.19□□□□□ -1.1
UPF2-203ENST00000397053 NSD3Q9BZ95 1437 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 GPR162Q16538 588 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 SPOUT1Q5T280 376 aaKnown RBP8.18□□□□□ -1.1
UPF2-203ENST00000397053 GSTA5Q7RTV2 222 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 RNF34Q969K3 372 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 CNNM2Q9H8M5 875 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.18□□□□□ -1.19e-8■■■■□ 22.5
UPF2-203ENST00000397053 KLF18A0A0U1RQI7 1052 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 ANXA1P04083 346 aa8.18□□□□□ -1.1
UPF2-203ENST00000397053 EIF6P56537 245 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms