RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 SYNE4Q8N205 404 aa18.65■□□□□ 0.58
SCAF11-204ENST00000395454 PCCAP05165 728 aaPredicted RBP18.64■□□□□ 0.58
SCAF11-204ENST00000395454 CCDC24Q8N4L8 307 aa18.64■□□□□ 0.58
SCAF11-204ENST00000395454 OSBPL3Q9H4L5 887 aa18.64■□□□□ 0.58
SCAF11-204ENST00000395454 UPF2Q9HAU5 1272 aaKnown RBP18.64■□□□□ 0.58
SCAF11-204ENST00000395454 SALL3Q9BXA9 1300 aa18.64■□□□□ 0.57
SCAF11-204ENST00000395454 H7C1W4 665 aa18.64■□□□□ 0.57
SCAF11-204ENST00000395454 POLD1P28340 1107 aa18.64■□□□□ 0.57
SCAF11-204ENST00000395454 ERFEQ4G0M1 354 aa18.63■□□□□ 0.57
SCAF11-204ENST00000395454 PRR5LQ6MZQ0 368 aa18.63■□□□□ 0.57
SCAF11-204ENST00000395454 GSPT1P15170 499 aaKnown RBP18.62■□□□□ 0.57
SCAF11-204ENST00000395454 TTC22Q5TAA0 569 aa18.62■□□□□ 0.57
SCAF11-204ENST00000395454 HDAC5Q9UQL6 1122 aa18.62■□□□□ 0.57
SCAF11-204ENST00000395454 IRS4O14654 1257 aaPredicted RBP18.62■□□□□ 0.57
SCAF11-204ENST00000395454 CASP7P55210 303 aa18.62■□□□□ 0.57
SCAF11-204ENST00000395454 ST5P78524 1137 aa18.62■□□□□ 0.57
SCAF11-204ENST00000395454 HCLS1P14317 486 aaPredicted RBP18.61■□□□□ 0.57
SCAF11-204ENST00000395454 ANP32EQ9BTT0 268 aa18.61■□□□□ 0.57
SCAF11-204ENST00000395454 ABCC12Q96J65 1359 aa18.61■□□□□ 0.57
SCAF11-204ENST00000395454 CDHR2Q9BYE9 1310 aa18.6■□□□□ 0.57
SCAF11-204ENST00000395454 SUCLG2Q96I99 432 aa18.6■□□□□ 0.57
SCAF11-204ENST00000395454 LRRCC1Q9C099 1032 aa18.6■□□□□ 0.57
SCAF11-204ENST00000395454 SPON1Q9HCB6 807 aa18.6■□□□□ 0.57
SCAF11-204ENST00000395454 NRXN2Q9P2S2 1712 aa18.59■□□□□ 0.57
SCAF11-204ENST00000395454 C16orf71Q8IYS4 520 aaPredicted RBP18.59■□□□□ 0.57
SCAF11-204ENST00000395454 OTUD7AQ8TE49 926 aaPredicted RBP18.59■□□□□ 0.57
SCAF11-204ENST00000395454 EXOC6BQ9Y2D4 811 aa18.59■□□□□ 0.57
SCAF11-204ENST00000395454 RAB11FIP3O75154 756 aa18.59■□□□□ 0.57
SCAF11-204ENST00000395454 UTRNP46939 3433 aa18.58■□□□□ 0.57
SCAF11-204ENST00000395454 SMARCA5O60264 1052 aaPredicted RBP18.58■□□□□ 0.56
SCAF11-204ENST00000395454 HSP90B1P14625 803 aaKnown RBP18.58■□□□□ 0.56
SCAF11-204ENST00000395454 PTGER2P43116 358 aa18.58■□□□□ 0.56
SCAF11-204ENST00000395454 ERICH6Q7L0X2 663 aa18.58■□□□□ 0.56
SCAF11-204ENST00000395454 DDX60Q8IY21 1712 aaKnown RBP18.58■□□□□ 0.56
SCAF11-204ENST00000395454 KAZALD1Q96I82 304 aa18.58■□□□□ 0.56
SCAF11-204ENST00000395454 SGIP1Q9BQI5 828 aa18.58■□□□□ 0.56
SCAF11-204ENST00000395454 AOX1Q06278 1338 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 PDE8AO60658 829 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 EIF5BO60841 1220 aaKnown RBP18.57■□□□□ 0.56
SCAF11-204ENST00000395454 CDC45O75419 566 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 TBC1D9Q6ZT07 1266 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 BICC1Q9H694 974 aaKnown RBP18.57■□□□□ 0.56
SCAF11-204ENST00000395454 STAP2Q9UGK3 403 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 MYH3P11055 1940 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 RBM25P49756 843 aaKnown RBP18.57■□□□□ 0.56
SCAF11-204ENST00000395454 EPHA10Q5JZY3 1008 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 SLC10A5Q5PT55 438 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 NLRP3Q96P20 1036 aa18.57■□□□□ 0.56
SCAF11-204ENST00000395454 PDE1AP54750 535 aa18.56■□□□□ 0.56
SCAF11-204ENST00000395454 CCDC85AQ96PX6 553 aaPredicted RBP18.56■□□□□ 0.56
SCAF11-204ENST00000395454 C22orf23Q9BZE7 217 aa18.56■□□□□ 0.56
SCAF11-204ENST00000395454 LAMB2P55268 1798 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 SRGAP3O43295 1099 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 CTSWP56202 376 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 C3orf67Q6ZVT6 689 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 BRIP1Q9BX63 1249 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 PLA2G12BQ9BX93 195 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 PPP1R1BQ9UD71 204 aaPredicted RBP18.55■□□□□ 0.56
SCAF11-204ENST00000395454 CHMP3Q9Y3E7 222 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 FOXO4P98177 505 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 HSP90AB4PQ58FF6 505 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 LMBR1LQ6UX01 489 aa18.55■□□□□ 0.56
SCAF11-204ENST00000395454 TNRC6CQ9HCJ0 1690 aaKnown RBP18.54■□□□□ 0.56
SCAF11-204ENST00000395454 KLHL34Q8N239 644 aa18.54■□□□□ 0.56
SCAF11-204ENST00000395454 ANKRD31Q8N7Z5 1873 aa18.53■□□□□ 0.56
SCAF11-204ENST00000395454 MFAP1P55081 439 aaKnown RBP18.53■□□□□ 0.56
SCAF11-204ENST00000395454 TTLL11Q8NHH1 800 aa18.53■□□□□ 0.56
SCAF11-204ENST00000395454 APBB1O00213 710 aa18.53■□□□□ 0.56
SCAF11-204ENST00000395454 PDE6BP35913 854 aa18.53■□□□□ 0.56
SCAF11-204ENST00000395454 RABL6Q3YEC7 729 aaPredicted RBP18.53■□□□□ 0.56
SCAF11-204ENST00000395454 C10orf71Q711Q0 1435 aa18.53■□□□□ 0.56
SCAF11-204ENST00000395454 RIC1Q4ADV7 1423 aa18.52■□□□□ 0.56
SCAF11-204ENST00000395454 SDSP20132 328 aa18.52■□□□□ 0.56
SCAF11-204ENST00000395454 MX1P20591 662 aa18.52■□□□□ 0.56
SCAF11-204ENST00000395454 CCDC152Q4G0S7 254 aa18.52■□□□□ 0.56
SCAF11-204ENST00000395454 KIF1BPQ96EK5 621 aa18.52■□□□□ 0.56
SCAF11-204ENST00000395454 GREM2Q9H772 168 aa18.52■□□□□ 0.56
SCAF11-204ENST00000395454 SURF6O75683 361 aaKnown RBP18.51■□□□□ 0.55
SCAF11-204ENST00000395454 CSF1RP07333 972 aa18.51■□□□□ 0.55
SCAF11-204ENST00000395454 SF3B3Q15393 1217 aaKnown RBP18.51■□□□□ 0.55
SCAF11-204ENST00000395454 RHPN1Q8TCX5 695 aa18.51■□□□□ 0.55
SCAF11-204ENST00000395454 RPGRQ92834 1020 aaKnown RBP18.5■□□□□ 0.55
SCAF11-204ENST00000395454 CCDC57Q2TAC2 916 aa18.49■□□□□ 0.55
SCAF11-204ENST00000395454 CRY2Q49AN0 593 aa18.49■□□□□ 0.55
SCAF11-204ENST00000395454 KLRG2A4D1S0 409 aaPredicted RBP18.49■□□□□ 0.55
SCAF11-204ENST00000395454 ITGA6P23229 1130 aa18.49■□□□□ 0.55
SCAF11-204ENST00000395454 IFIT5Q13325 482 aaKnown RBP18.49■□□□□ 0.55
SCAF11-204ENST00000395454 BECN1Q14457 450 aa18.49■□□□□ 0.55
SCAF11-204ENST00000395454 KIF13BQ9NQT8 1826 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 H0YIN7 160 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 SRGNP10124 158 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 CHRNA5P30532 468 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 DDX46Q7L014 1031 aaKnown RBP18.48■□□□□ 0.55
SCAF11-204ENST00000395454 C2CD5Q86YS7 1000 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 ERC1Q8IUD2 1116 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 SEC31BQ9NQW1 1179 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 AK9Q5TCS8 1911 aa18.48■□□□□ 0.55
SCAF11-204ENST00000395454 COL11A2P13942 1736 aaPredicted RBP18.47■□□□□ 0.55
SCAF11-204ENST00000395454 TAF1P21675 1872 aa18.47■□□□□ 0.55
SCAF11-204ENST00000395454 ANKRD18BA2A2Z9 1011 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms