RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 SLC4A9Q96Q91 983 aa16.77■□□□□ 0.28
SNCA-204ENST00000394989 TM6SF1Q9BZW5 370 aa16.77■□□□□ 0.28
SNCA-204ENST00000394989 LIMCH1Q9UPQ0 1083 aa16.77■□□□□ 0.28
SNCA-204ENST00000394989 RPAP1Q9BWH6 1393 aaPredicted RBP16.77■□□□□ 0.28
SNCA-204ENST00000394989 PRPF40AO75400 957 aaKnown RBP16.77■□□□□ 0.28
SNCA-204ENST00000394989 LRRC24Q50LG9 513 aa16.77■□□□□ 0.28
SNCA-204ENST00000394989 ZNF330Q9Y3S2 320 aaPredicted RBP16.77■□□□□ 0.28
SNCA-204ENST00000394989 BCL9O00512 1426 aa16.77■□□□□ 0.27
SNCA-204ENST00000394989 TCIRG1Q13488 830 aa16.77■□□□□ 0.27
SNCA-204ENST00000394989 GRPEL1Q9HAV7 217 aa16.77■□□□□ 0.27
SNCA-204ENST00000394989 SLC27A2O14975 620 aa16.76■□□□□ 0.27
SNCA-204ENST00000394989 MRE11P49959 708 aa16.76■□□□□ 0.27
SNCA-204ENST00000394989 VPS53Q5VIR6 699 aa16.76■□□□□ 0.27
SNCA-204ENST00000394989 GPT2Q8TD30 523 aa16.76■□□□□ 0.27
SNCA-204ENST00000394989 HAUS7Q99871 368 aa16.76■□□□□ 0.27
SNCA-204ENST00000394989 AHDC1Q5TGY3 1603 aaPredicted RBP16.76■□□□□ 0.27
SNCA-204ENST00000394989 DNAJC2Q99543 621 aaKnown RBP16.76■□□□□ 0.27
SNCA-204ENST00000394989 ZNF609O15014 1411 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 TAF5LO75529 589 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 TIMM10P62072 90 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 PDRG1Q9NUG6 133 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 ISY1Q9ULR0 285 aaKnown RBP16.75■□□□□ 0.27
SNCA-204ENST00000394989 WNK3Q9BYP7 1800 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 LRP6O75581 1613 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 TEX13AQ9BXU3 409 aaPredicted RBP16.75■□□□□ 0.27
SNCA-204ENST00000394989 PUS3Q9BZE2 481 aaKnown RBP16.75■□□□□ 0.27
SNCA-204ENST00000394989 CCDC9Q9Y3X0 531 aaKnown RBP16.75■□□□□ 0.27
SNCA-204ENST00000394989 CYP46A1Q9Y6A2 500 aa16.75■□□□□ 0.27
SNCA-204ENST00000394989 ZKSCAN1P17029 563 aaPredicted RBP16.74■□□□□ 0.27
SNCA-204ENST00000394989 DDX46Q7L014 1031 aaKnown RBP16.74■□□□□ 0.27
SNCA-204ENST00000394989 EYA2O00167 538 aa16.74■□□□□ 0.27
SNCA-204ENST00000394989 IL15P40933 162 aaPredicted RBP16.74■□□□□ 0.27
SNCA-204ENST00000394989 ST3GAL1Q11201 340 aa16.74■□□□□ 0.27
SNCA-204ENST00000394989 TRIM28Q13263 835 aaKnown RBP16.74■□□□□ 0.27
SNCA-204ENST00000394989 TRIM44Q96DX7 344 aaPredicted RBP16.74■□□□□ 0.27
SNCA-204ENST00000394989 SEC62Q99442 399 aaKnown RBP16.74■□□□□ 0.27
SNCA-204ENST00000394989 RFX7Q2KHR2 1363 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 KCNJ4P48050 445 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 GPR108Q9NPR9 543 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 NSFL1CQ9UNZ2 370 aaKnown RBP16.73■□□□□ 0.27
SNCA-204ENST00000394989 FAM89AQ96GI7 184 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 NEUROD6Q96NK8 337 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 DTNBO60941 627 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 STARD3NLO95772 234 aa16.73■□□□□ 0.27
SNCA-204ENST00000394989 CAVIN1Q6NZI2 390 aaKnown RBP16.73■□□□□ 0.27
SNCA-204ENST00000394989 CLCN1P35523 988 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 HLFQ16534 295 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 USPL1Q5W0Q7 1092 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 CCDC129Q6ZRS4 1044 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 CIAO1O76071 339 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 CYP19A1P11511 503 aaPredicted RBP16.72■□□□□ 0.27
SNCA-204ENST00000394989 ME3Q16798 604 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 KIF6Q6ZMV9 814 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 SYNE4Q8N205 404 aa16.72■□□□□ 0.27
SNCA-204ENST00000394989 MAP3K15Q6ZN16 1313 aa16.71■□□□□ 0.27
SNCA-204ENST00000394989 ZSCAN23Q3MJ62 389 aa16.71■□□□□ 0.27
SNCA-204ENST00000394989 SLFNL1Q499Z3 407 aa16.71■□□□□ 0.27
SNCA-204ENST00000394989 KBTBD3Q8NAB2 608 aa16.71■□□□□ 0.27
SNCA-204ENST00000394989 TPCN1Q9ULQ1 816 aa16.71■□□□□ 0.27
SNCA-204ENST00000394989 A0A1B0GUL7 405 aa16.71■□□□□ 0.26
SNCA-204ENST00000394989 PCCAP05165 728 aaPredicted RBP16.71■□□□□ 0.26
SNCA-204ENST00000394989 NCLP19338 710 aaKnown RBP16.71■□□□□ 0.26
SNCA-204ENST00000394989 GIGYF2Q6Y7W6 1299 aaKnown RBP16.71■□□□□ 0.26
SNCA-204ENST00000394989 CCDC83Q8IWF9 413 aa16.71■□□□□ 0.26
SNCA-204ENST00000394989 KAT6BQ8WYB5 2073 aa16.71■□□□□ 0.26
SNCA-204ENST00000394989 WDR33Q9C0J8 1336 aaKnown RBP16.71■□□□□ 0.26
SNCA-204ENST00000394989 DOT1LQ8TEK3 1739 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 EXOC5O00471 708 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 TSGA10IPQ3SY00 556 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 FOXD4L6Q3SYB3 417 aaPredicted RBP16.7■□□□□ 0.26
SNCA-204ENST00000394989 FOXD4L3Q6VB84 417 aaPredicted RBP16.7■□□□□ 0.26
SNCA-204ENST00000394989 ZBTB38Q8NAP3 1195 aaPredicted RBP16.7■□□□□ 0.26
SNCA-204ENST00000394989 CCDC85AQ96PX6 553 aaPredicted RBP16.7■□□□□ 0.26
SNCA-204ENST00000394989 RBM27Q9P2N5 1060 aaKnown RBP16.7■□□□□ 0.26
SNCA-204ENST00000394989 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.7■□□□□ 0.26
SNCA-204ENST00000394989 PALLDQ8WX93 1383 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 SYT1P21579 422 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 TCEANC2Q96MN5 208 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 PLA2G12BQ9BX93 195 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 ZBTB1Q9Y2K1 713 aa16.7■□□□□ 0.26
SNCA-204ENST00000394989 ESPNB1AK53 854 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 GOLIM4O00461 696 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 ZNF445P59923 1031 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 RBM10P98175 930 aaKnown RBP16.69■□□□□ 0.26
SNCA-204ENST00000394989 SYTL4Q96C24 671 aaPredicted RBP16.69■□□□□ 0.26
SNCA-204ENST00000394989 PAG1Q9NWQ8 432 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 TCHHQ07283 1943 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 ANKRD36CQ5JPF3 1778 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 CSF1RP07333 972 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 CCDC57Q2TAC2 916 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 MCMDC2Q4G0Z9 681 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 RNF20Q5VTR2 975 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 PSMA5P28066 241 aa16.69■□□□□ 0.26
SNCA-204ENST00000394989 RPS6KB1P23443 525 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 NLRP10Q86W26 655 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 ZSCAN31Q96LW9 406 aaPredicted RBP16.68■□□□□ 0.26
SNCA-204ENST00000394989 SH2B1Q9NRF2 756 aaPredicted RBP16.68■□□□□ 0.26
SNCA-204ENST00000394989 HMG20BQ9P0W2 317 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 TMEM63CQ9P1W3 806 aa16.68■□□□□ 0.26
SNCA-204ENST00000394989 SMC3Q9UQE7 1217 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms