RNA–Protein interactions for RNA: ENST00000376957.6

SRM-201, Transcript of spermidine synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRM, Length 1,266 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-201ENST00000376957 OLFM4Q6UX06 510 aa28.15■■■□□ 2.1
SRM-201ENST00000376957 VPS33BQ9H267 617 aa28.14■■■□□ 2.1
SRM-201ENST00000376957 NMRK2Q9NPI5 230 aa28.14■■■□□ 2.1
SRM-201ENST00000376957 DDX60Q8IY21 1712 aaKnown RBP28.14■■■□□ 2.1
SRM-201ENST00000376957 CDHR2Q9BYE9 1310 aa28.14■■■□□ 2.09
SRM-201ENST00000376957 NEURL1BA8MQ27 555 aa28.13■■■□□ 2.09
SRM-201ENST00000376957 KIF3CO14782 793 aa28.13■■■□□ 2.09
SRM-201ENST00000376957 TOMM70O94826 608 aa28.13■■■□□ 2.09
SRM-201ENST00000376957 LINS1Q8NG48 757 aa28.13■■■□□ 2.09
SRM-201ENST00000376957 IGKV5-2P06315 115 aa28.12■■■□□ 2.09
SRM-201ENST00000376957 VEGFAP15692 232 aaPredicted RBP28.12■■■□□ 2.09
SRM-201ENST00000376957 CWF19L2Q2TBE0 894 aaKnown RBP28.12■■■□□ 2.09
SRM-201ENST00000376957 DPP8Q6V1X1 898 aaPredicted RBP28.12■■■□□ 2.09
SRM-201ENST00000376957 RRAGCQ9HB90 399 aa28.12■■■□□ 2.09
SRM-201ENST00000376957 MPNDQ8N594 471 aa28.11■■■□□ 2.09
SRM-201ENST00000376957 RPS8P62241 208 aaKnown RBP28.09■■■□□ 2.09
SRM-201ENST00000376957 GCKRQ14397 625 aa28.09■■■□□ 2.09
SRM-201ENST00000376957 LARGE2Q8N3Y3 721 aa28.09■■■□□ 2.09
SRM-201ENST00000376957 CT47B1P0C2W7 299 aaPredicted RBP28.08■■■□□ 2.09
SRM-201ENST00000376957 EIF6P56537 245 aaKnown RBP28.07■■■□□ 2.08
SRM-201ENST00000376957 UBE3BQ7Z3V4 1068 aa28.07■■■□□ 2.08
SRM-201ENST00000376957 H7C1W4 665 aa28.06■■■□□ 2.08
SRM-201ENST00000376957 NIM1KQ8IY84 436 aa28.06■■■□□ 2.08
SRM-201ENST00000376957 JARID2Q92833 1246 aaPredicted RBP28.06■■■□□ 2.08
SRM-201ENST00000376957 CDC5LQ99459 802 aaKnown RBP28.06■■■□□ 2.08
SRM-201ENST00000376957 IQCA1LA6NCM1 817 aa28.05■■■□□ 2.08
SRM-201ENST00000376957 PPIP5K2O43314 1243 aa28.05■■■□□ 2.08
SRM-201ENST00000376957 CTSWP56202 376 aa28.05■■■□□ 2.08
SRM-201ENST00000376957 CELF1Q92879 486 aaKnown RBP28.05■■■□□ 2.08
SRM-201ENST00000376957 CDCA7LQ96GN5 454 aa28.05■■■□□ 2.08
SRM-201ENST00000376957 RTFDC1Q9BY42 306 aaPredicted RBP28.05■■■□□ 2.08
SRM-201ENST00000376957 SNED1Q8TER0 1413 aa28.04■■■□□ 2.08
SRM-201ENST00000376957 PTPRCP08575 1304 aa28.04■■■□□ 2.08
SRM-201ENST00000376957 ALDH1L2Q3SY69 923 aa28.04■■■□□ 2.08
SRM-201ENST00000376957 ANKRD18AQ8IVF6 992 aa28.04■■■□□ 2.08
SRM-201ENST00000376957 RBM46Q8TBY0 533 aaKnown RBP28.04■■■□□ 2.08
SRM-201ENST00000376957 NSFL1CQ9UNZ2 370 aaKnown RBP28.04■■■□□ 2.08
SRM-201ENST00000376957 F6X3S4 739 aa28.03■■■□□ 2.08
SRM-201ENST00000376957 FZD9O00144 591 aa28.03■■■□□ 2.08
SRM-201ENST00000376957 SLC4A10Q6U841 1118 aa28.03■■■□□ 2.08
SRM-201ENST00000376957 DDNO94850 711 aaPredicted RBP28.02■■■□□ 2.08
SRM-201ENST00000376957 BEND3Q5T5X7 828 aa28.02■■■□□ 2.08
SRM-201ENST00000376957 ALDH1L1O75891 902 aa28.01■■■□□ 2.07
SRM-201ENST00000376957 TRMT2AQ8IZ69 625 aaKnown RBP28.01■■■□□ 2.07
SRM-201ENST00000376957 CCDC85AQ96PX6 553 aaPredicted RBP28.01■■■□□ 2.07
SRM-201ENST00000376957 EYA3Q99504 573 aa28.01■■■□□ 2.07
SRM-201ENST00000376957 SRCIN1Q9C0H9 1055 aa28.01■■■□□ 2.07
SRM-201ENST00000376957 C9orf78Q9NZ63 289 aaPredicted RBP28.01■■■□□ 2.07
SRM-201ENST00000376957 AOC3Q16853 763 aa28■■■□□ 2.07
SRM-201ENST00000376957 GPC2Q8N158 579 aa28■■■□□ 2.07
SRM-201ENST00000376957 MRPL50Q8N5N7 158 aaKnown RBP28■■■□□ 2.07
SRM-201ENST00000376957 TTLL11Q8NHH1 800 aa28■■■□□ 2.07
SRM-201ENST00000376957 PLA2G12BQ9BX93 195 aa28■■■□□ 2.07
SRM-201ENST00000376957 SEC31BQ9NQW1 1179 aa28■■■□□ 2.07
SRM-201ENST00000376957 ANKIB1Q9P2G1 1089 aa28■■■□□ 2.07
SRM-201ENST00000376957 WDR90Q96KV7 1748 aa28■■■□□ 2.07
SRM-201ENST00000376957 MYH3P11055 1940 aa28■■■□□ 2.07
SRM-201ENST00000376957 TAF1P21675 1872 aa28■■■□□ 2.07
SRM-201ENST00000376957 HNRNPUQ00839 825 aaKnown RBP eCLIP27.99■■■□□ 2.07
SRM-201ENST00000376957 FSTL1Q12841 308 aa27.99■■■□□ 2.07
SRM-201ENST00000376957 SMC4Q9NTJ3 1288 aa27.99■■■□□ 2.07
SRM-201ENST00000376957 C6orf229H3BNL8 230 aa27.98■■■□□ 2.07
SRM-201ENST00000376957 WASHC4Q2M389 1173 aa27.98■■■□□ 2.07
SRM-201ENST00000376957 SMC1BQ8NDV3 1235 aa27.98■■■□□ 2.07
SRM-201ENST00000376957 SSH1Q8WYL5 1049 aa27.98■■■□□ 2.07
SRM-201ENST00000376957 IGHMBP2P38935 993 aaKnown RBP27.97■■■□□ 2.07
SRM-201ENST00000376957 KIAA2012Q0VF49 1180 aa27.97■■■□□ 2.07
SRM-201ENST00000376957 L3MBTL3Q96JM7 780 aaPredicted RBP27.97■■■□□ 2.07
SRM-201ENST00000376957 ZNRF3Q9ULT6 936 aa27.97■■■□□ 2.07
SRM-201ENST00000376957 RTL9Q8NET4 1388 aa27.97■■■□□ 2.07
SRM-201ENST00000376957 GRM8O00222 908 aa27.96■■■□□ 2.07
SRM-201ENST00000376957 LRRC37AA6NMS7 1700 aa27.95■■■□□ 2.07
SRM-201ENST00000376957 ZNF541Q9H0D2 1346 aa27.95■■■□□ 2.07
SRM-201ENST00000376957 LMOD1P29536 600 aaPredicted RBP27.95■■■□□ 2.06
SRM-201ENST00000376957 GREM2Q9H772 168 aa27.95■■■□□ 2.06
SRM-201ENST00000376957 GJA3Q9Y6H8 435 aa27.95■■■□□ 2.06
SRM-201ENST00000376957 G3V3G9 751 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 HSPA6P17066 643 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 GPSM2P81274 684 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 DCAF8Q5TAQ9 597 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 BCL2L13Q9BXK5 485 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 ZC3H12CQ9C0D7 883 aaKnown RBP27.94■■■□□ 2.06
SRM-201ENST00000376957 PODXL2Q9NZ53 605 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 HACL1Q9UJ83 578 aa27.94■■■□□ 2.06
SRM-201ENST00000376957 SCN4AP35499 1836 aa27.93■■■□□ 2.06
SRM-201ENST00000376957 TNIP1Q15025 636 aa27.93■■■□□ 2.06
SRM-201ENST00000376957 MPHOSPH8Q99549 860 aa27.93■■■□□ 2.06
SRM-201ENST00000376957 BSDC1Q9NW68 430 aaPredicted RBP27.93■■■□□ 2.06
SRM-201ENST00000376957 GGA1Q9UJY5 639 aa27.93■■■□□ 2.06
SRM-201ENST00000376957 CASP7P55210 303 aa27.92■■■□□ 2.06
SRM-201ENST00000376957 PNMA8AQ86V59 439 aaPredicted RBP27.92■■■□□ 2.06
SRM-201ENST00000376957 XDHP47989 1333 aa27.92■■■□□ 2.06
SRM-201ENST00000376957 ANKRD18BA2A2Z9 1011 aa27.91■■■□□ 2.06
SRM-201ENST00000376957 POTECB2RU33 542 aa27.91■■■□□ 2.06
SRM-201ENST00000376957 CSF1RP07333 972 aa27.91■■■□□ 2.06
SRM-201ENST00000376957 ITGA6P23229 1130 aa27.91■■■□□ 2.06
SRM-201ENST00000376957 IFIT5Q13325 482 aaKnown RBP27.91■■■□□ 2.06
SRM-201ENST00000376957 SLC51AQ86UW1 340 aa27.91■■■□□ 2.06
SRM-201ENST00000376957 TBC1D16Q8TBP0 767 aa27.91■■■□□ 2.06
SRM-201ENST00000376957 CHMP3Q9Y3E7 222 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms