RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 KIAA1328Q86T90 577 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 CNNM3Q8NE01 707 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 RTL1A6NKG5 1358 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 SKILP12757 684 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 UHRF1BP1LA0JNW5 1464 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 CTAGE5O15320 804 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 EPB41L2O43491 1005 aaKnown RBP7.6□□□□□ -1.19
SMC1A-202ENST00000375340 ERCC4Q92889 916 aaPredicted RBP7.6□□□□□ -1.19
SMC1A-202ENST00000375340 FAM227BQ96M60 508 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 CEP89Q96ST8 783 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 CENPHQ9H3R5 247 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 IQGAP1P46940 1657 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 HMGB1P09429 215 aaKnown RBP7.6□□□□□ -1.19
SMC1A-202ENST00000375340 PODXL2Q9NZ53 605 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 ZNF213O14771 459 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 ANKLE2Q86XL3 938 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 FLT4P35916 1363 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 CDC37L1Q7L3B6 337 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 DEF6Q9H4E7 631 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 HMG20BQ9P0W2 317 aa7.6□□□□□ -1.19
SMC1A-202ENST00000375340 ATP2B2Q01814 1243 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 ZNF445P59923 1031 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 SLC26A6Q9BXS9 759 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 SLC27A2O14975 620 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 HOXC9P31274 260 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 FAM173BQ6P4H8 233 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 TCEAL9Q9UHQ7 104 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 RXRAP19793 462 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 NUP88Q99567 741 aaPredicted RBP7.59□□□□□ -1.19
SMC1A-202ENST00000375340 GNL3LQ9NVN8 582 aaKnown RBP7.59□□□□□ -1.19
SMC1A-202ENST00000375340 KLF18A0A0U1RQI7 1052 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 GRM8O00222 908 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 METAP2P50579 478 aaKnown RBP eCLIP7.59□□□□□ -1.199e-6■■■□□ 16
SMC1A-202ENST00000375340 DHX8Q14562 1220 aaKnown RBP7.59□□□□□ -1.19
SMC1A-202ENST00000375340 ZHX3Q9H4I2 956 aa7.59□□□□□ -1.19
SMC1A-202ENST00000375340 ORC3Q9UBD5 711 aaPredicted RBP7.59□□□□□ -1.19
SMC1A-202ENST00000375340 ARHGAP29Q52LW3 1261 aa7.59□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC181Q5TID7 509 aa7.59□□□□□ -1.2
SMC1A-202ENST00000375340 WASF1Q92558 559 aa7.59□□□□□ -1.2
SMC1A-202ENST00000375340 HECW2Q9P2P5 1572 aa7.59□□□□□ -1.2
SMC1A-202ENST00000375340 FSD2A1L4K1 749 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 CHRNA2Q15822 529 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 ZNHIT6Q9NWK9 470 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 ZSCAN12O43309 604 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 DNA2P51530 1060 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 CWC25Q9NXE8 425 aaPredicted RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 AKAP2Q9Y2D5 859 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 PAXBP1Q9Y5B6 917 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC171Q6TFL3 1326 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 KRT18P05783 430 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 HS1BP3Q53T59 392 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 TTC41PQ6P2S7 1318 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 SETD1BQ9UPS6 1966 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 RIOK3O14730 519 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 ERLIN1O75477 346 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 TMEM67Q5HYA8 995 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 NAPBQ9H115 298 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 ABCF2Q9UG63 623 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 ZC3H13Q5T200 1668 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 H0YHG0 523 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 IFIT5Q13325 482 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 MCMDC2Q4G0Z9 681 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 TMOD3Q9NYL9 352 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 CEP131Q9UPN4 1083 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 TTC21AQ8NDW8 1320 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 IFIT3O14879 490 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 GSDMDP57764 484 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 COPS6Q7L5N1 327 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 INTS4Q96HW7 963 aaKnown RBP7.58□□□□□ -1.2
SMC1A-202ENST00000375340 PAG1Q9NWQ8 432 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 RPS6KB1P23443 525 aa7.58□□□□□ -1.2
SMC1A-202ENST00000375340 KIF5CO60282 957 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC150Q8NCX0 1101 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 MAP3K19Q56UN5 1328 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 STIM1Q13586 685 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 PRDM11Q9NQV5 511 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 U2AF2P26368 475 aaKnown RBP eCLIP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 IKQ13123 557 aaPredicted RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 KSR2Q6VAB6 950 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 NCOA5Q9HCD5 579 aaKnown RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 MROH2AA6NES4 1674 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 PTPDC1A2A3K4 754 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 RANBP6O60518 1105 aaKnown RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 EIF3JO75822 258 aaKnown RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 EIF5P55010 431 aaKnown RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 AFMP43652 599 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 ZSCAN16Q9H4T2 348 aaPredicted RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 LGR6Q9HBX8 967 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 CAMSAP1Q5T5Y3 1602 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 RNF17Q9BXT8 1623 aaKnown RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 SYKP43405 635 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC148Q8NFR7 591 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 CBX8Q9HC52 389 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 KIF2AO00139 706 aaPredicted RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 NEMFO60524 1076 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 UBASH3AP57075 661 aa7.57□□□□□ -1.2
SMC1A-202ENST00000375340 MRPS27Q92552 414 aaKnown RBP7.57□□□□□ -1.2
SMC1A-202ENST00000375340 ERBB4Q15303 1308 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 NCOA7Q8NI08 942 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 IFNKQ9P0W0 207 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms