RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 CA8P35219 290 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 MICU3Q86XE3 530 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 MCM3P25205 808 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 UTP14AQ9BVJ6 771 aaKnown RBP16.47■□□□□ 0.23
TRAF1-201ENST00000373887 GNPATO15228 680 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 MTHFSDQ2M296 383 aaKnown RBP16.47■□□□□ 0.23
TRAF1-201ENST00000373887 DDX23Q9BUQ8 820 aaKnown RBP16.47■□□□□ 0.23
TRAF1-201ENST00000373887 TTC21AQ8NDW8 1320 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 USO1O60763 962 aaKnown RBP16.47■□□□□ 0.23
TRAF1-201ENST00000373887 CYP7A1P22680 504 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 CCDC183Q5T5S1 534 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 STX8Q9UNK0 236 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 CCDC194A0A1B0GVG4 234 aa16.47■□□□□ 0.23
TRAF1-201ENST00000373887 TTF1Q15361 905 aaPredicted RBP16.47■□□□□ 0.23
TRAF1-201ENST00000373887 RNF41Q9H4P4 317 aaPredicted RBP16.47■□□□□ 0.23
TRAF1-201ENST00000373887 LDHCP07864 332 aa16.46■□□□□ 0.23
TRAF1-201ENST00000373887 NBPF14Q5TI25 921 aa16.46■□□□□ 0.23
TRAF1-201ENST00000373887 ZMYM3Q14202 1370 aa16.46■□□□□ 0.23
TRAF1-201ENST00000373887 SMARCC1Q92922 1105 aaPredicted RBP16.46■□□□□ 0.23
TRAF1-201ENST00000373887 VTI1AQ96AJ9 217 aa16.46■□□□□ 0.23
TRAF1-201ENST00000373887 KIF2AO00139 706 aaPredicted RBP16.46■□□□□ 0.23
TRAF1-201ENST00000373887 MFSD6Q6ZSS7 791 aa16.46■□□□□ 0.23
TRAF1-201ENST00000373887 DRC1Q96MC2 740 aa16.46■□□□□ 0.23
TRAF1-201ENST00000373887 ANKRD36BQ8N2N9 1353 aa16.46■□□□□ 0.22
TRAF1-201ENST00000373887 PDE4BQ07343 736 aa16.46■□□□□ 0.22
TRAF1-201ENST00000373887 AKAP4Q5JQC9 854 aa16.46■□□□□ 0.22
TRAF1-201ENST00000373887 BIN1O00499 593 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 EVI5LQ96CN4 794 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 ECHDC1Q9NTX5 307 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 NSFL1CQ9UNZ2 370 aaKnown RBP16.45■□□□□ 0.22
TRAF1-201ENST00000373887 YEATS4O95619 227 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 ISM2Q6H9L7 571 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 LMBR1LQ6UX01 489 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 PLS1Q14651 629 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 TMC6Q7Z403 805 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 PANK2Q9BZ23 570 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 CCDC196A0A1B0GTZ2 297 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 FAM98CQ17RN3 349 aaKnown RBP16.45■□□□□ 0.22
TRAF1-201ENST00000373887 OGFOD1Q8N543 542 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 PUF60Q9UHX1 559 aaKnown RBP16.45■□□□□ 0.22
TRAF1-201ENST00000373887 GCP02774 474 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 MMRN2Q9H8L6 949 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 HDAC9Q9UKV0 1011 aa16.45■□□□□ 0.22
TRAF1-201ENST00000373887 PA2G4Q9UQ80 394 aaKnown RBP16.45■□□□□ 0.22
TRAF1-201ENST00000373887 CNNM3Q8NE01 707 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 USP25Q9UHP3 1055 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 GJA3Q9Y6H8 435 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 MTIF2P46199 727 aaKnown RBP16.44■□□□□ 0.22
TRAF1-201ENST00000373887 CRNKL1Q9BZJ0 848 aaKnown RBP16.44■□□□□ 0.22
TRAF1-201ENST00000373887 DUOX2Q9NRD8 1548 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 TSPY3P0CV98 308 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 TSPY8P0CW00 308 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 ZSWIM4Q9H7M6 989 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 TCERG1LQ5VWI1 586 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 MEIS3Q99687 375 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 LRRC2Q9BYS8 371 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 CIZ1Q9ULV3 898 aaPredicted RBP16.44■□□□□ 0.22
TRAF1-201ENST00000373887 SLC4A4Q9Y6R1 1079 aa16.44■□□□□ 0.22
TRAF1-201ENST00000373887 NOP2P46087 812 aaKnown RBP16.43■□□□□ 0.22
TRAF1-201ENST00000373887 LMAN1P49257 510 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 KRT24Q2M2I5 525 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 CCDC24Q8N4L8 307 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 ORAI2Q96SN7 254 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 FERP16591 822 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 C8orf58Q8NAV2 365 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 ZHX1Q9UKY1 873 aaPredicted RBP16.43■□□□□ 0.22
TRAF1-201ENST00000373887 NSD2O96028 1365 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 TMEM266Q2M3C6 531 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 GIGYF2Q6Y7W6 1299 aaKnown RBP16.43■□□□□ 0.22
TRAF1-201ENST00000373887 ALS2CR12Q96Q35 445 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 SLC26A6Q9BXS9 759 aa16.43■□□□□ 0.22
TRAF1-201ENST00000373887 PPP4R3BQ5MIZ7 849 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 TAOK3Q9H2K8 898 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 FSD2A1L4K1 749 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 ATP2B3Q16720 1220 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 CWF19L2Q2TBE0 894 aaKnown RBP16.42■□□□□ 0.22
TRAF1-201ENST00000373887 PRC1O43663 620 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 FGFR1OPO95684 399 aaKnown RBP16.42■□□□□ 0.22
TRAF1-201ENST00000373887 EHMT1Q9H9B1 1298 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 GSTO1P78417 241 aa16.42■□□□□ 0.22
TRAF1-201ENST00000373887 APBB1IPQ7Z5R6 666 aaPredicted RBP16.42■□□□□ 0.22
TRAF1-201ENST00000373887 SPATA24Q86W54 205 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 PPP1R14CQ8TAE6 165 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 CALCOCO1Q9P1Z2 691 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 USP16Q9Y5T5 823 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 BIVM-ERCC5R4GMW8 1640 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 CCDC40Q4G0X9 1142 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 NUP153P49790 1475 aaKnown RBP16.41■□□□□ 0.22
TRAF1-201ENST00000373887 MIGA1Q8NAN2 632 aa16.41■□□□□ 0.22
TRAF1-201ENST00000373887 PAIP2Q9BPZ3 127 aaKnown RBP16.41■□□□□ 0.22
TRAF1-201ENST00000373887 RPRD2Q5VT52 1461 aaKnown RBP16.41■□□□□ 0.22
TRAF1-201ENST00000373887 ZNF804AQ7Z570 1209 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 FSIP1Q8NA03 581 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 JADE2Q9NQC1 790 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 TPTE2Q6XPS3 522 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 PABPN1LA6NDY0 278 aaKnown RBP16.4■□□□□ 0.22
TRAF1-201ENST00000373887 SSFA2P28290 1259 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 TSNARE1Q96NA8 513 aa16.4■□□□□ 0.22
TRAF1-201ENST00000373887 NAA15Q9BXJ9 866 aaKnown RBP16.4■□□□□ 0.22
TRAF1-201ENST00000373887 ZNF408Q9H9D4 720 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms