RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CALCOCO1Q9P1Z2 691 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 ATP5J2-PTCD1G3V325 749 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 POTEB2H3BUK9 544 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 C8orf34Q49A92 452 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 CRACR2BQ8N4Y2 399 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 PANK2Q9BZ23 570 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 PAXBP1Q9Y5B6 917 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 TTC21AQ8NDW8 1320 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 MTIF2P46199 727 aaKnown RBP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 CCDC150Q8NCX0 1101 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 FAM200AQ8TCP9 573 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 SLAIN2Q9P270 581 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 POLR3GO15318 223 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 TEX13AQ9BXU3 409 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 ARHGEF12Q9NZN5 1544 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 EXOC5O00471 708 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 MPHOSPH10O00566 681 aaKnown RBP13.16□□□□□ -0.3
PTPRF-203ENST00000372407 ANXA1P04083 346 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 GBP2P32456 591 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-203ENST00000372407 NECAB1Q8N987 351 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 PRDM10Q9NQV6 1147 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 KIF5BP33176 963 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 TNIP1Q15025 636 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 ANKRD13DQ6ZTN6 518 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 PRAG1Q86YV5 1406 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 IDEP14735 1019 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 BMS1Q14692 1282 aaKnown RBP13.16□□□□□ -0.3
PTPRF-203ENST00000372407 DYDC1Q8WWB3 177 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 NPHP4O75161 1426 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-203ENST00000372407 ZPR1O75312 459 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 PRKCSHP14314 528 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-203ENST00000372407 GPTP24298 496 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 GNG11P61952 73 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 AMPD3Q01432 767 aa13.16□□□□□ -0.3
PTPRF-203ENST00000372407 SNRPA1P09661 255 aaKnown RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 CCDC12Q8WUD4 166 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 SMARCC1Q92922 1105 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 UBA5Q9GZZ9 404 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 RBM8AQ9Y5S9 174 aaKnown RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 NLRP1Q9C000 1473 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 ZFYP08048 801 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 RBM25P49756 843 aaKnown RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 ATP8B2P98198 1209 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 SPECC1Q5M775 1068 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 MFSD6Q6ZSS7 791 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 NAA15Q9BXJ9 866 aaKnown RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 ABCA9Q8IUA7 1624 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 SYKP43405 635 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 CEP135Q66GS9 1140 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 DDX46Q7L014 1031 aaKnown RBP13.15□□□□□ -0.3
PTPRF-203ENST00000372407 PARD3Q8TEW0 1356 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 PPIP5K1Q6PFW1 1433 aa13.15□□□□□ -0.3
PTPRF-203ENST00000372407 UGGT1Q9NYU2 1555 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 KCNG4Q8TDN1 519 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 ANKIB1Q9P2G1 1089 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC171Q6TFL3 1326 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 KLF18A0A0U1RQI7 1052 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 ALDH1L1O75891 902 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 LDHCP07864 332 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 IFFO1Q0D2I5 559 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 TCEANC2Q96MN5 208 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 N4BP3O15049 544 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 PPFIA3O75145 1194 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 NBPF7P0C2Y1 421 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-203ENST00000372407 FBLN1P23142 703 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 DNA2P51530 1060 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 NOLC1Q14978 699 aaKnown RBP eCLIP13.14□□□□□ -0.311e-6■■□□□ 11.5
PTPRF-203ENST00000372407 CCDC96Q2M329 555 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 PPP4R3BQ5MIZ7 849 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC186Q7Z3E2 898 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 USP48Q86UV5 1035 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 SMC5Q8IY18 1101 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 MRPL50Q8N5N7 158 aaKnown RBP13.14□□□□□ -0.31
PTPRF-203ENST00000372407 C8orf58Q8NAV2 365 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 CALML4Q96GE6 196 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 SLC26A6Q9BXS9 759 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 MATR3P43243 847 aaKnown RBP eCLIP13.14□□□□□ -0.317e-14■■■■■ 41.6
PTPRF-203ENST00000372407 ISM2Q6H9L7 571 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 ALS2CR12Q96Q35 445 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 CDC5LQ99459 802 aaKnown RBP13.14□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC113Q9H0I3 377 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 INCENPQ9NQS7 918 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 DACT1Q9NYF0 836 aa13.14□□□□□ -0.31
PTPRF-203ENST00000372407 SLF2Q8IX21 1173 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC144CPQ8IYA2 1237 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 DCTPP1Q9H773 170 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 PPP1R1BQ9UD71 204 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-203ENST00000372407 CNPY2Q9Y2B0 182 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 ZKSCAN5Q9Y2L8 839 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 EFCAB6Q5THR3 1501 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 GSTTP1A0A1W2PQM5 241 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 POLR3AO14802 1390 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-203ENST00000372407 ADGBQ8N7X0 1667 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 TSPY2A6NKD2 308 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 UQCRFS1P1P0C7P4 283 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 SKILP12757 684 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 MAP2K1Q02750 393 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-203ENST00000372407 CABLES1Q8TDN4 633 aa13.13□□□□□ -0.31
PTPRF-203ENST00000372407 FAM107BQ9H098 131 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms