RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 UVSSAQ2YD98 709 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 SLFNL1Q499Z3 407 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 LARP1Q6PKG0 1096 aaKnown RBP6.44□□□□□ -1.38
ATG4A-204ENST00000372246 USHBP1Q8N6Y0 703 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 FAM184AQ8NB25 1140 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 KIF18AQ8NI77 898 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 PI4K2BQ8TCG2 481 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 DIAPH3Q9NSV4 1193 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 ZNF446Q9NWS9 450 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 CLIP2Q9UDT6 1046 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 LIMCH1Q9UPQ0 1083 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 SETBP1Q9Y6X0 1596 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 CPS1P31327 1500 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 SGSM2O43147 1006 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 KIF20AO95235 890 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 CCDC192P0DO97 292 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 PBX2P40425 430 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 RBM6P78332 1123 aaKnown RBP6.43□□□□□ -1.38
ATG4A-204ENST00000372246 GOLGA8FQ08AF8 430 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 GOLGA8DPQ0D2H9 430 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 MLECQ14165 292 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 LARP1BQ659C4 914 aaKnown RBP6.43□□□□□ -1.38
ATG4A-204ENST00000372246 CCDC112Q8NEF3 446 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 PGBD1Q96JS3 809 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 NUP62CLQ9H1M0 184 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 TNMDQ9H2S6 317 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 PDRG1Q9NUG6 133 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 MAP2P11137 1827 aaKnown RBP6.43□□□□□ -1.38
ATG4A-204ENST00000372246 CHD1O14646 1710 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 YEATS2Q9ULM3 1422 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 KIAA0232Q92628 1395 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 DLG5Q8TDM6 1919 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 SRGAP3O43295 1099 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 MCM2P49736 904 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 ZNF75DP51815 510 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 GYS2P54840 703 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 LSM11P83369 360 aaKnown RBP eCLIP6.43□□□□□ -1.38
ATG4A-204ENST00000372246 ISM2Q6H9L7 571 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.43□□□□□ -1.38
ATG4A-204ENST00000372246 OGFRQ9NZT2 677 aa6.43□□□□□ -1.38
ATG4A-204ENST00000372246 DDX41Q9UJV9 622 aaKnown RBP6.43□□□□□ -1.38
ATG4A-204ENST00000372246 MAP3K19Q56UN5 1328 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 RAD50Q92878 1312 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 SIGLEC1Q9BZZ2 1709 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 POLR3GO15318 223 aaPredicted RBP6.42□□□□□ -1.38
ATG4A-204ENST00000372246 CAPN2P17655 700 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 ZNF165P49910 485 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 MAP3K9P80192 1104 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 ATP8B2P98198 1209 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 GUCY1B3Q02153 619 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 MAP3K11Q16584 847 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 ERCC6LQ2NKX8 1250 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 CEP135Q66GS9 1140 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 TMEM87AQ8NBN3 555 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 KLHDC4Q8TBB5 520 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 FAM200AQ8TCP9 573 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 RHPN1Q8TCX5 695 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 BICD2Q8TD16 824 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 ZCCHC17Q9NP64 241 aaKnown RBP6.42□□□□□ -1.38
ATG4A-204ENST00000372246 TLR7Q9NYK1 1049 aaKnown RBP6.42□□□□□ -1.38
ATG4A-204ENST00000372246 RIMS1Q86UR5 1692 aaKnown RBP6.42□□□□□ -1.38
ATG4A-204ENST00000372246 KCNQ3O43525 872 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 TERF2Q15554 542 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 NUDT16Q96DE0 195 aaKnown RBP6.42□□□□□ -1.38
ATG4A-204ENST00000372246 FMNL2Q96PY5 1086 aa6.42□□□□□ -1.38
ATG4A-204ENST00000372246 SEC62Q99442 399 aaKnown RBP6.42□□□□□ -1.38
ATG4A-204ENST00000372246 DPYSL4O14531 572 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 RAB11FIP3O75154 756 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 SEC31AO94979 1220 aaKnown RBP6.41□□□□□ -1.38
ATG4A-204ENST00000372246 UBTFL1P0CB47 393 aaPredicted RBP6.41□□□□□ -1.38
ATG4A-204ENST00000372246 LMOD3Q0VAK6 560 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 OS9Q13438 667 aaPredicted RBP6.41□□□□□ -1.38
ATG4A-204ENST00000372246 NEK11Q8NG66 645 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 CCDC8Q9H0W5 538 aaPredicted RBP6.41□□□□□ -1.38
ATG4A-204ENST00000372246 SIL1Q9H173 461 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 NEXMIFQ5QGS0 1516 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 KIDINS220Q9ULH0 1771 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 PTPRCP08575 1304 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 PRR36Q9H6K5 1346 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 A0A0G2JLW4 131 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 SKILP12757 684 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 ANAPC15P60006 121 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 FAM177A1Q8N128 213 aaPredicted RBP6.41□□□□□ -1.38
ATG4A-204ENST00000372246 SPATA32Q96LK8 384 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 STK31Q9BXU1 1019 aa6.41□□□□□ -1.38
ATG4A-204ENST00000372246 GOLGA6L4A6NEF3 574 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 SMTNL1A8MU46 457 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 BIN1O00499 593 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 ARHGAP33O14559 1287 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 HSP90AA4PQ58FG1 418 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 PLA2G4DQ86XP0 818 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 ZNF454Q8N9F8 522 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 LEO1Q8WVC0 666 aaPredicted RBP6.4□□□□□ -1.38
ATG4A-204ENST00000372246 GOLPH3LQ9H4A5 285 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 STAP2Q9UGK3 403 aa6.4□□□□□ -1.38
ATG4A-204ENST00000372246 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.4□□□□□ -1.38
ATG4A-204ENST00000372246 RBM8AQ9Y5S9 174 aaKnown RBP6.4□□□□□ -1.38
ATG4A-204ENST00000372246 RPGRIP1LQ68CZ1 1315 aa6.4□□□□□ -1.39
ATG4A-204ENST00000372246 PRAMEF22A3QJZ6 481 aa6.4□□□□□ -1.39
ATG4A-204ENST00000372246 PSEN2P49810 448 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms