RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 SLF2Q8IX21 1173 aa11.35□□□□□ -0.59
TPM3-213ENST00000368545 EXOC5O00471 708 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 IL13P35225 146 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 ELOAQ14241 798 aaKnown RBP11.34□□□□□ -0.59
TPM3-213ENST00000368545 CHRNA2Q15822 529 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 PLEKHF1Q96S99 279 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 LHX6Q9UPM6 363 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 RTL1A6NKG5 1358 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 TNS2Q63HR2 1409 aa11.34□□□□□ -0.59
TPM3-213ENST00000368545 NEFMP07197 916 aa11.33□□□□□ -0.6
TPM3-213ENST00000368545 SLIT3O75094 1523 aa11.33□□□□□ -0.6
TPM3-213ENST00000368545 NFAT5O94916 1531 aa11.33□□□□□ -0.6
TPM3-213ENST00000368545 PIK3CDO00329 1044 aa11.33□□□□□ -0.6
TPM3-213ENST00000368545 MAP3K19Q56UN5 1328 aa11.33□□□□□ -0.6
TPM3-213ENST00000368545 GABBR2O75899 941 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 PPP4R3BQ5MIZ7 849 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 WDR17Q8IZU2 1322 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
TPM3-213ENST00000368545 CARD10Q9BWT7 1032 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 PXDNLA1KZ92 1463 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 RNF123Q5XPI4 1314 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 PTPREP23469 700 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 ZC3H6P61129 1189 aaKnown RBP11.32□□□□□ -0.6
TPM3-213ENST00000368545 PROX2Q3B8N5 592 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 DNAJC14Q6Y2X3 702 aaPredicted RBP11.32□□□□□ -0.6
TPM3-213ENST00000368545 MARCH10Q8NA82 808 aaPredicted RBP11.32□□□□□ -0.6
TPM3-213ENST00000368545 KCNH5Q8NCM2 988 aa11.32□□□□□ -0.6
TPM3-213ENST00000368545 KIAA1522Q9P206 1035 aaPredicted RBP11.32□□□□□ -0.6
TPM3-213ENST00000368545 ERICH6BQ5W0A0 696 aa11.31□□□□□ -0.6
TPM3-213ENST00000368545 GPR153Q6NV75 609 aa11.31□□□□□ -0.6
TPM3-213ENST00000368545 WDR63Q8IWG1 891 aa11.31□□□□□ -0.6
TPM3-213ENST00000368545 NLGN2Q8NFZ4 835 aa11.31□□□□□ -0.6
TPM3-213ENST00000368545 HSPA1AP0DMV8 641 aaKnown RBP11.3□□□□□ -0.6
TPM3-213ENST00000368545 HSPA1BP0DMV9 641 aaKnown RBP11.3□□□□□ -0.6
TPM3-213ENST00000368545 SLFN5Q08AF3 891 aa11.3□□□□□ -0.6
TPM3-213ENST00000368545 EIF4A2Q14240 407 aaKnown RBP11.3□□□□□ -0.6
TPM3-213ENST00000368545 DUSP27Q5VZP5 1158 aa11.3□□□□□ -0.6
TPM3-213ENST00000368545 SMC1BQ8NDV3 1235 aa11.3□□□□□ -0.6
TPM3-213ENST00000368545 NOVA2Q9UNW9 492 aaKnown RBP11.3□□□□□ -0.6
TPM3-213ENST00000368545 KDM2BQ8NHM5 1336 aa11.3□□□□□ -0.6
TPM3-213ENST00000368545 AMPHP49418 695 aa11.3□□□□□ -0.6
TPM3-213ENST00000368545 TRMT2AQ8IZ69 625 aaKnown RBP11.3□□□□□ -0.6
TPM3-213ENST00000368545 RCAN3Q9UKA8 241 aa11.3□□□□□ -0.6
TPM3-213ENST00000368545 DLG5Q8TDM6 1919 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 PRKAR2BP31323 418 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 TMPOP42166 694 aaKnown RBP11.29□□□□□ -0.6
TPM3-213ENST00000368545 RGS19P49795 217 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 TOM1L2Q6ZVM7 507 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 PNMA1Q8ND90 353 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 PNPLA7Q6ZV29 1317 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 ZC3H4Q9UPT8 1303 aaKnown RBP11.29□□□□□ -0.6
TPM3-213ENST00000368545 HOXB3P14651 431 aaPredicted RBP11.29□□□□□ -0.6
TPM3-213ENST00000368545 FUT2Q10981 343 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 NOM1Q5C9Z4 860 aaKnown RBP11.29□□□□□ -0.6
TPM3-213ENST00000368545 NUTM2GQ5VZR2 741 aa11.29□□□□□ -0.6
TPM3-213ENST00000368545 TNRC6CQ9HCJ0 1690 aaKnown RBP11.28□□□□□ -0.6
TPM3-213ENST00000368545 HSP90AB2PQ58FF8 381 aa11.28□□□□□ -0.6
TPM3-213ENST00000368545 MRRFQ96E11 262 aaKnown RBP11.28□□□□□ -0.6
TPM3-213ENST00000368545 RRP7AQ9Y3A4 280 aaKnown RBP11.28□□□□□ -0.6
TPM3-213ENST00000368545 HOXC9P31274 260 aa11.27□□□□□ -0.6
TPM3-213ENST00000368545 SWT1Q5T5J6 900 aaKnown RBP11.27□□□□□ -0.6
TPM3-213ENST00000368545 USP17L3A6NCW0 530 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 USP17L4A6NCW7 530 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 HMOX1P09601 288 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 SSFA2P28290 1259 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 USP17L2Q6R6M4 530 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 USP17L1Q7RTZ2 530 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 TFCP2L1Q9NZI6 479 aa11.27□□□□□ -0.61
TPM3-213ENST00000368545 IL16Q14005 1332 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 BTAF1O14981 1849 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 GCP02774 474 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 LMOD3Q0VAK6 560 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 NFE2L2Q16236 605 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 ZNF827Q17R98 1081 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 MYH16Q9H6N6 1097 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 KDRP35968 1356 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 IGSF1Q8N6C5 1336 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 RIPK4P57078 832 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 MLLT1Q03111 559 aaPredicted RBP11.26□□□□□ -0.61
TPM3-213ENST00000368545 NR1H3Q13133 447 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 DOK7Q18PE1 504 aa11.26□□□□□ -0.61
TPM3-213ENST00000368545 ZNF526Q8TF50 670 aaPredicted RBP11.26□□□□□ -0.61
TPM3-213ENST00000368545 FBXO45P0C2W1 286 aa11.25□□□□□ -0.61
TPM3-213ENST00000368545 RRP1P56182 461 aaKnown RBP11.25□□□□□ -0.61
TPM3-213ENST00000368545 IP6K1Q92551 441 aa11.25□□□□□ -0.61
TPM3-213ENST00000368545 ARID4AP29374 1257 aaPredicted RBP11.24□□□□□ -0.61
TPM3-213ENST00000368545 CALD1Q05682 793 aaKnown RBP11.24□□□□□ -0.61
TPM3-213ENST00000368545 CRTC2Q53ET0 693 aaPredicted RBP11.24□□□□□ -0.61
TPM3-213ENST00000368545 SULT6B1Q6IMI4 303 aa11.24□□□□□ -0.61
TPM3-213ENST00000368545 CTCFP49711 727 aaPredicted RBP11.24□□□□□ -0.61
TPM3-213ENST00000368545 DEPDC4Q8N2C3 294 aa11.24□□□□□ -0.61
TPM3-213ENST00000368545 COL18A1P39060 1754 aa11.24□□□□□ -0.61
TPM3-213ENST00000368545 ZNF16P17020 682 aaPredicted RBP11.23□□□□□ -0.61
TPM3-213ENST00000368545 AIDAQ96BJ3 306 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 FAM208AQ9UK61 1670 aaKnown RBP11.23□□□□□ -0.61
TPM3-213ENST00000368545 USP17L5A8MUK1 530 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 SKIP12755 728 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 ARHGEF25Q86VW2 580 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 NFATC2IPQ8NCF5 419 aa11.23□□□□□ -0.61
TPM3-213ENST00000368545 PHACTR3Q96KR7 559 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms