RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 K7ELQ4 463 aaPredicted RBP12.89□□□□□ -0.35
TPM3-212ENST00000368533 RFX5P48382 616 aaPredicted RBP12.89□□□□□ -0.35
TPM3-212ENST00000368533 CWC27Q6UX04 472 aaKnown RBP12.89□□□□□ -0.35
TPM3-212ENST00000368533 SNX21Q969T3 373 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 GBP4Q96PP9 640 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 ISCA1Q9BUE6 129 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 ANO2Q9NQ90 1003 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 WNK3Q9BYP7 1800 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 N4BP2Q86UW6 1770 aaPredicted RBP12.89□□□□□ -0.35
TPM3-212ENST00000368533 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.89□□□□□ -0.35
TPM3-212ENST00000368533 HSP90AB4PQ58FF6 505 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 NOL8Q76FK4 1167 aaKnown RBP12.88□□□□□ -0.35
TPM3-212ENST00000368533 DNAJC2Q99543 621 aaKnown RBP12.88□□□□□ -0.35
TPM3-212ENST00000368533 DBNDD2Q9BQY9 259 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 GREM2Q9H772 168 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 NIP7Q9Y221 180 aaKnown RBP eCLIP12.88□□□□□ -0.35
TPM3-212ENST00000368533 R3HCC1Q9Y3T6 440 aaKnown RBP12.88□□□□□ -0.35
TPM3-212ENST00000368533 MYH14Q7Z406 1995 aaKnown RBP12.88□□□□□ -0.35
TPM3-212ENST00000368533 SNAP23O00161 211 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 GNPATO15228 680 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 TRIM37O94972 964 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 SLFNL1Q499Z3 407 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 HELBQ8NG08 1087 aaPredicted RBP12.88□□□□□ -0.35
TPM3-212ENST00000368533 CCNL1Q9UK58 526 aaPredicted RBP12.88□□□□□ -0.35
TPM3-212ENST00000368533 HDAC5Q9UQL6 1122 aa12.88□□□□□ -0.35
TPM3-212ENST00000368533 IRS4O14654 1257 aaPredicted RBP12.87□□□□□ -0.35
TPM3-212ENST00000368533 EIF5P55010 431 aaKnown RBP12.87□□□□□ -0.35
TPM3-212ENST00000368533 PDE4CQ08493 712 aa12.87□□□□□ -0.35
TPM3-212ENST00000368533 CCDC57Q2TAC2 916 aa12.87□□□□□ -0.35
TPM3-212ENST00000368533 SUSD4Q5VX71 490 aa12.87□□□□□ -0.35
TPM3-212ENST00000368533 KIF2CQ99661 725 aa12.87□□□□□ -0.35
TPM3-212ENST00000368533 TRPC5Q9UL62 973 aaPredicted RBP12.87□□□□□ -0.35
TPM3-212ENST00000368533 NWD2Q9ULI1 1742 aa12.87□□□□□ -0.35
TPM3-212ENST00000368533 IL6STP40189 918 aaPredicted RBP12.87□□□□□ -0.35
TPM3-212ENST00000368533 DBNLQ9UJU6 430 aaKnown RBP12.86□□□□□ -0.35
TPM3-212ENST00000368533 OSBPL3Q9H4L5 887 aa12.86□□□□□ -0.35
TPM3-212ENST00000368533 ECHDC1Q9NTX5 307 aa12.86□□□□□ -0.35
TPM3-212ENST00000368533 CHMLP26374 656 aa12.86□□□□□ -0.35
TPM3-212ENST00000368533 RABL6Q3YEC7 729 aaPredicted RBP12.86□□□□□ -0.35
TPM3-212ENST00000368533 ERC1Q8IUD2 1116 aa12.85□□□□□ -0.35
TPM3-212ENST00000368533 ZBTB38Q8NAP3 1195 aaPredicted RBP12.85□□□□□ -0.35
TPM3-212ENST00000368533 SNRKQ9NRH2 765 aa12.85□□□□□ -0.35
TPM3-212ENST00000368533 NCLP19338 710 aaKnown RBP12.85□□□□□ -0.35
TPM3-212ENST00000368533 TNNI3KQ59H18 835 aa12.85□□□□□ -0.35
TPM3-212ENST00000368533 FPGT-TNNI3KV9GXZ4 949 aa12.85□□□□□ -0.35
TPM3-212ENST00000368533 GOLGA6L22H0YM25 854 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 DTNBO60941 627 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 ITGA6P23229 1130 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 SSFA2P28290 1259 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 ATG9AQ7Z3C6 839 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 COPRSQ9NQ92 184 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 SEC31BQ9NQW1 1179 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 STAP2Q9UGK3 403 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 ERC2O15083 957 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 CAMTA2O94983 1202 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 IFIT5Q13325 482 aaKnown RBP12.84□□□□□ -0.35
TPM3-212ENST00000368533 USPL1Q5W0Q7 1092 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 DDX46Q7L014 1031 aaKnown RBP12.84□□□□□ -0.35
TPM3-212ENST00000368533 SMARCC1Q92922 1105 aaPredicted RBP12.84□□□□□ -0.35
TPM3-212ENST00000368533 NUP188Q5SRE5 1749 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 COL15A1P39059 1388 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 ESYT1Q9BSJ8 1104 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 USP26Q9BXU7 913 aa12.84□□□□□ -0.35
TPM3-212ENST00000368533 CIZ1Q9ULV3 898 aaPredicted RBP12.84□□□□□ -0.35
TPM3-212ENST00000368533 TJP1Q07157 1748 aa12.83□□□□□ -0.35
TPM3-212ENST00000368533 PCCAP05165 728 aaPredicted RBP12.83□□□□□ -0.36
TPM3-212ENST00000368533 GTF2E1P29083 439 aaPredicted RBP12.83□□□□□ -0.36
TPM3-212ENST00000368533 ADORA1P30542 326 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 CNTROBQ8N137 903 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 FAM227BQ96M60 508 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 BCL11BQ9C0K0 894 aaPredicted RBP12.83□□□□□ -0.36
TPM3-212ENST00000368533 PALD1Q9ULE6 856 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 NPHP1O15259 732 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 GLRX3O76003 335 aaKnown RBP12.83□□□□□ -0.36
TPM3-212ENST00000368533 RABEP1Q15276 862 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 LDHAL6AQ6ZMR3 332 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 TTLL11Q8NHH1 800 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 LARP6Q9BRS8 491 aaKnown RBP12.83□□□□□ -0.36
TPM3-212ENST00000368533 FSD1Q9BTV5 496 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 CNNM1Q9NRU3 951 aa12.83□□□□□ -0.36
TPM3-212ENST00000368533 PI16Q6UXB8 463 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 GPATCH3Q96I76 525 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 LRRC4BQ9NT99 713 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 RAB3GAP1Q15042 981 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 DIAPH3Q9NSV4 1193 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 EYA2O00167 538 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 TAF5LO75529 589 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 CTSWP56202 376 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 HSP90AB3PQ58FF7 597 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 FAM196AQ6ZSG2 479 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 C3orf67Q6ZVT6 689 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 SLC51AQ86UW1 340 aa12.82□□□□□ -0.36
TPM3-212ENST00000368533 A0A1B0GUL7 405 aa12.81□□□□□ -0.36
TPM3-212ENST00000368533 METTL24Q5JXM2 366 aa12.81□□□□□ -0.36
TPM3-212ENST00000368533 GORABQ5T7V8 394 aa12.81□□□□□ -0.36
TPM3-212ENST00000368533 FOXD4L5Q5VV16 416 aaPredicted RBP12.81□□□□□ -0.36
TPM3-212ENST00000368533 TBC1D9BQ66K14 1250 aa12.81□□□□□ -0.36
TPM3-212ENST00000368533 FOXD4L4Q8WXT5 416 aaPredicted RBP12.81□□□□□ -0.36
TPM3-212ENST00000368533 UPF3BQ9BZI7 483 aaKnown RBP12.81□□□□□ -0.36
TPM3-212ENST00000368533 WTIPA6NIX2 430 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms