RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 LRSAM1Q6UWE0 723 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 PROSER2Q86WR7 435 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-209ENST00000367257 NAPBQ9H115 298 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 TCP11L1Q9NUJ3 509 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 SLC12A7Q9Y666 1083 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 FKBP4Q02790 459 aaKnown RBP eCLIP10.22□□□□□ -0.77
SYNE1-209ENST00000367257 DUSP27Q5VZP5 1158 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 KRBA2Q6ZNG9 492 aa10.22□□□□□ -0.77
SYNE1-209ENST00000367257 C16orf45Q96MC5 204 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-209ENST00000367257 SEPT11Q9NVA2 429 aaKnown RBP10.22□□□□□ -0.77
SYNE1-209ENST00000367257 CAMSAP2Q08AD1 1489 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 IQGAP3Q86VI3 1631 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 STX6O43752 255 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 CCDC102BQ68D86 513 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 CATIPQ7Z7H3 387 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 ECHDC1Q9NTX5 307 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 DBF4Q9UBU7 674 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-209ENST00000367257 CCDC194A0A1B0GVG4 234 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 CCDC155Q8N6L0 562 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 RSRC1Q96IZ7 334 aaKnown RBP10.21□□□□□ -0.77
SYNE1-209ENST00000367257 TBC1D32Q96NH3 1257 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 RASAL2Q9UJF2 1139 aa10.21□□□□□ -0.77
SYNE1-209ENST00000367257 ZNF213O14771 459 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 ARFGAP2Q8N6H7 521 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 TNPO1Q92973 898 aaKnown RBP10.21□□□□□ -0.78
SYNE1-209ENST00000367257 NUP88Q99567 741 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-209ENST00000367257 FSD2A1L4K1 749 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 DCAF8L1A6NGE4 600 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 HSF2BPO75031 334 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 UQCRFS1P1P0C7P4 283 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 PIP4K2BP78356 416 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 SPTY2D1Q68D10 685 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-209ENST00000367257 ANKLE2Q86XL3 938 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 LMBR1Q8WVP7 490 aa10.21□□□□□ -0.78
SYNE1-209ENST00000367257 RPRD2Q5VT52 1461 aaKnown RBP10.2□□□□□ -0.78
SYNE1-209ENST00000367257 NAA25Q14CX7 972 aa10.2□□□□□ -0.78
SYNE1-209ENST00000367257 PRPF40BQ6NWY9 871 aaKnown RBP10.2□□□□□ -0.78
SYNE1-209ENST00000367257 CCDC77Q9BR77 488 aa10.2□□□□□ -0.78
SYNE1-209ENST00000367257 GNAQP50148 359 aa10.2□□□□□ -0.78
SYNE1-209ENST00000367257 METTL24Q5JXM2 366 aa10.2□□□□□ -0.78
SYNE1-209ENST00000367257 HMGB1P1B2RPK0 211 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 SSBP05455 408 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 RNF168Q8IYW5 571 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 FSIP1Q8NA03 581 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 CNNM2Q9H8M5 875 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 ASXL2Q76L83 1435 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 GSTTP1A0A1W2PQM5 241 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 NBPF7P0C2Y1 421 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 CEP135Q66GS9 1140 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 FAM177A1Q8N128 213 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 MYRIPQ8NFW9 859 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 SECISBP2LQ93073 1101 aaKnown RBP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 SELENOOQ9BVL4 669 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 TBC1D2Q9BYX2 928 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 PIK3C2BO00750 1634 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 DIP2CQ9Y2E4 1556 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 GOLGA8AA7E2F4 631 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 GOLGA8BA8MQT2 603 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 CAPN2P17655 700 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 USP25Q9UHP3 1055 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 INSRP06213 1382 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 HSPA4P34932 840 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 CROCCP2Q86T23 111 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 ERMNQ8TAM6 284 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 FAM200AQ8TCP9 573 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 TSNARE1Q96NA8 513 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 MPHOSPH6Q99547 160 aaKnown RBP10.19□□□□□ -0.78
SYNE1-209ENST00000367257 RAD50Q92878 1312 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 NEURL4Q96JN8 1562 aa10.19□□□□□ -0.78
SYNE1-209ENST00000367257 KRT83P78385 493 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 TOM1L2Q6ZVM7 507 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 CEP57Q86XR8 500 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 NAP1L4Q99733 375 aaKnown RBP10.18□□□□□ -0.78
SYNE1-209ENST00000367257 PLCH2O75038 1416 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 WDHD1O75717 1129 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-209ENST00000367257 ZNF165P49910 485 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 STRN4Q9NRL3 753 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 ZNF853P0CG23 659 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 TTC22Q5TAA0 569 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 KRT23Q9C075 422 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 SIL1Q9H173 461 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 PRDM15P57071 1507 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-209ENST00000367257 CLNS1AP54105 237 aaKnown RBP10.18□□□□□ -0.78
SYNE1-209ENST00000367257 GSTO1P78417 241 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 NCOA7Q8NI08 942 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 ARFGAP3Q9NP61 516 aa10.18□□□□□ -0.78
SYNE1-209ENST00000367257 CTAGE15A4D2H0 777 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 ADCY5O95622 1261 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 CTAGE8P0CG41 777 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 FERP16591 822 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 IARSP41252 1262 aaKnown RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 MTIF2P46199 727 aaKnown RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 IFIT5Q13325 482 aaKnown RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 CTAGE6Q86UF2 777 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 CTAGE4Q8IX94 777 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 NUDT16Q96DE0 195 aaKnown RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 IDH1O75874 414 aaKnown RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 ZSCAN22P10073 491 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-209ENST00000367257 PDE4BQ07343 736 aa10.17□□□□□ -0.78
SYNE1-209ENST00000367257 RBBP5Q15291 538 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms