RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CCDC8Q9H0W5 538 aaPredicted RBP11.41□□□□□ -0.58
USP4-202ENST00000351842 IQSEC3Q9UPP2 1182 aaPredicted RBP11.41□□□□□ -0.58
USP4-202ENST00000351842 PDZRN3Q9UPQ7 1066 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 LAMB4A4D0S4 1761 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 A0A0G2JLW4 131 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 MAP4K4O95819 1239 aaPredicted RBP11.41□□□□□ -0.58
USP4-202ENST00000351842 TTLL11Q8NHH1 800 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 PDE8AO60658 829 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 FOXO4P98177 505 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 CELF1Q92879 486 aaKnown RBP11.41□□□□□ -0.58
USP4-202ENST00000351842 JAG2Q9Y219 1238 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 NDUFB9Q9Y6M9 179 aa11.41□□□□□ -0.58
USP4-202ENST00000351842 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.41□□□□□ -0.58
USP4-202ENST00000351842 CACNA1FO60840 1977 aa11.4□□□□□ -0.58
USP4-202ENST00000351842 POLRMTO00411 1230 aaKnown RBP11.4□□□□□ -0.58
USP4-202ENST00000351842 ATP8B2P98198 1209 aa11.4□□□□□ -0.58
USP4-202ENST00000351842 FLAD1Q8NFF5 587 aa11.4□□□□□ -0.58
USP4-202ENST00000351842 ANKRD18BA2A2Z9 1011 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 DDX46Q7L014 1031 aaKnown RBP11.39□□□□□ -0.59
USP4-202ENST00000351842 NYXQ9GZU5 481 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 TNS1Q9HBL0 1735 aaKnown RBP11.39□□□□□ -0.59
USP4-202ENST00000351842 NUP98P52948 1817 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 AFDNP55196 1824 aaKnown RBP11.39□□□□□ -0.59
USP4-202ENST00000351842 TAF1LQ8IZX4 1826 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 ARFGEF2Q9Y6D5 1785 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 POLD1P28340 1107 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 TIMM10P62072 90 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 METTL24Q5JXM2 366 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 RPAP2Q8IXW5 612 aaPredicted RBP11.39□□□□□ -0.59
USP4-202ENST00000351842 LY75O60449 1722 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 CASP7P55210 303 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 CCDC152Q4G0S7 254 aa11.39□□□□□ -0.59
USP4-202ENST00000351842 TFCP2Q12800 502 aa11.38□□□□□ -0.59
USP4-202ENST00000351842 GORABQ5T7V8 394 aa11.38□□□□□ -0.59
USP4-202ENST00000351842 ANKIB1Q9P2G1 1089 aa11.38□□□□□ -0.59
USP4-202ENST00000351842 AACSQ86V21 672 aa11.38□□□□□ -0.59
USP4-202ENST00000351842 NSFL1CQ9UNZ2 370 aaKnown RBP11.38□□□□□ -0.59
USP4-202ENST00000351842 IGHMBP2P38935 993 aaKnown RBP11.37□□□□□ -0.59
USP4-202ENST00000351842 TRIM28Q13263 835 aaKnown RBP11.37□□□□□ -0.59
USP4-202ENST00000351842 CENPQQ7L2Z9 268 aaPredicted RBP11.37□□□□□ -0.59
USP4-202ENST00000351842 C2CD5Q86YS7 1000 aa11.37□□□□□ -0.59
USP4-202ENST00000351842 TM4SF1P30408 202 aa11.37□□□□□ -0.59
USP4-202ENST00000351842 KCNJ4P48050 445 aa11.37□□□□□ -0.59
USP4-202ENST00000351842 PTPN12Q05209 780 aaKnown RBP11.37□□□□□ -0.59
USP4-202ENST00000351842 ATP10DQ9P241 1426 aa11.37□□□□□ -0.59
USP4-202ENST00000351842 COL5A3P25940 1745 aaPredicted RBP11.37□□□□□ -0.59
USP4-202ENST00000351842 TAF1P21675 1872 aa11.37□□□□□ -0.59
USP4-202ENST00000351842 HDAC5Q9UQL6 1122 aa11.37□□□□□ -0.59
USP4-202ENST00000351842 ANKRD18AQ8IVF6 992 aa11.36□□□□□ -0.59
USP4-202ENST00000351842 FBXW7Q969H0 707 aa11.36□□□□□ -0.59
USP4-202ENST00000351842 LRRCC1Q9C099 1032 aa11.36□□□□□ -0.59
USP4-202ENST00000351842 TLR7Q9NYK1 1049 aaKnown RBP11.36□□□□□ -0.59
USP4-202ENST00000351842 SNRKQ9NRH2 765 aa11.36□□□□□ -0.59
USP4-202ENST00000351842 UBR3Q6ZT12 1888 aa11.36□□□□□ -0.59
USP4-202ENST00000351842 RIMBP2O15034 1052 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 FRAT2O75474 233 aaPredicted RBP11.35□□□□□ -0.59
USP4-202ENST00000351842 RHPN1Q8TCX5 695 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 IFIT2P09913 472 aaKnown RBP11.35□□□□□ -0.59
USP4-202ENST00000351842 CHD1LQ86WJ1 897 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 SSH3Q8TE77 659 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 CEP126Q9P2H0 1117 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 BCS1LQ9Y276 419 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 H0YIN7 160 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 C6orf229H3BNL8 230 aa11.35□□□□□ -0.59
USP4-202ENST00000351842 TRIM6-TRIM34B2RNG4 842 aa11.34□□□□□ -0.59
USP4-202ENST00000351842 RPS8P62241 208 aaKnown RBP11.34□□□□□ -0.59
USP4-202ENST00000351842 CLASRPQ8N2M8 674 aaKnown RBP11.34□□□□□ -0.59
USP4-202ENST00000351842 MTFR1LQ9H019 292 aa11.34□□□□□ -0.59
USP4-202ENST00000351842 C21orf2O43822 256 aa11.34□□□□□ -0.59
USP4-202ENST00000351842 SASH1O94885 1247 aa11.34□□□□□ -0.59
USP4-202ENST00000351842 CDC5LQ99459 802 aaKnown RBP11.34□□□□□ -0.59
USP4-202ENST00000351842 DCTPP1Q9H773 170 aa11.34□□□□□ -0.59
USP4-202ENST00000351842 DPEP1P16444 411 aa11.33□□□□□ -0.59
USP4-202ENST00000351842 HDAC1Q13547 482 aaPredicted RBP11.33□□□□□ -0.59
USP4-202ENST00000351842 NLGN2Q8NFZ4 835 aa11.33□□□□□ -0.59
USP4-202ENST00000351842 RILPL2Q969X0 211 aa11.33□□□□□ -0.59
USP4-202ENST00000351842 DNAJC2Q99543 621 aaKnown RBP11.33□□□□□ -0.59
USP4-202ENST00000351842 EYA2O00167 538 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 ADORA1P30542 326 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 EDC3Q96F86 508 aaKnown RBP11.33□□□□□ -0.6
USP4-202ENST00000351842 PDE4AP27815 886 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 VPS37DQ86XT2 251 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 DBNDD2Q9BQY9 259 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 BOLA2Q9H3K6 86 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 SPON1Q9HCB6 807 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 C4AP0C0L4 1744 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 PXDNLA1KZ92 1463 aa11.33□□□□□ -0.6
USP4-202ENST00000351842 KLRK1P26718 216 aa11.32□□□□□ -0.6
USP4-202ENST00000351842 PI16Q6UXB8 463 aa11.32□□□□□ -0.6
USP4-202ENST00000351842 EAF2Q96CJ1 260 aaPredicted RBP11.32□□□□□ -0.6
USP4-202ENST00000351842 UTYO14607 1347 aa11.32□□□□□ -0.6
USP4-202ENST00000351842 RFX5P48382 616 aaPredicted RBP11.32□□□□□ -0.6
USP4-202ENST00000351842 FKBP4Q02790 459 aaKnown RBP eCLIP11.32□□□□□ -0.6
USP4-202ENST00000351842 CHRNDQ07001 517 aa11.32□□□□□ -0.6
USP4-202ENST00000351842 RABL6Q3YEC7 729 aaPredicted RBP11.32□□□□□ -0.6
USP4-202ENST00000351842 TMX4Q9H1E5 349 aaPredicted RBP11.32□□□□□ -0.6
USP4-202ENST00000351842 KDM2BQ8NHM5 1336 aa11.32□□□□□ -0.6
USP4-202ENST00000351842 PCNTO95613 3336 aa11.32□□□□□ -0.6
USP4-202ENST00000351842 GCC1Q96CN9 775 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 KIF1BPQ96EK5 621 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms