RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 FBXO31Q5XUX0 539 aaPredicted RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 SYT10Q6XYQ8 523 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 RUFY2Q8WXA3 655 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 DDX11Q96FC9 970 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 FAM227BQ96M60 508 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 GOLPH3LQ9H4A5 285 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 PHAXQ9H814 394 aaKnown RBP7.98□□□□□ -1.13
VPS39-202ENST00000348544 LRRC37A3O60309 1634 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 TTC41PQ6P2S7 1318 aa7.98□□□□□ -1.13
VPS39-202ENST00000348544 STK3Q13188 491 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 ARHGAP29Q52LW3 1261 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 SPATA31D1Q6ZQQ2 1576 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 PRR36Q9H6K5 1346 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 OVOS2A0A0J9YW53 1432 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 OVOS2Q6IE36 1432 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 KIF2AO00139 706 aaPredicted RBP7.97□□□□□ -1.13
VPS39-202ENST00000348544 FANCGO15287 622 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 GIGYF1O75420 1035 aaPredicted RBP7.97□□□□□ -1.13
VPS39-202ENST00000348544 RAPGEF3O95398 923 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 PDIA4P13667 645 aaKnown RBP7.97□□□□□ -1.13
VPS39-202ENST00000348544 ZKSCAN1P17029 563 aaPredicted RBP7.97□□□□□ -1.13
VPS39-202ENST00000348544 ARMCX5Q6P1M9 558 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 MAP4K1Q92918 833 aa7.97□□□□□ -1.13
VPS39-202ENST00000348544 FTOQ9C0B1 505 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS39-202ENST00000348544 OSBPL5Q9H0X9 879 aaPredicted RBP7.97□□□□□ -1.13
VPS39-202ENST00000348544 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.97□□□□□ -1.133e-7■□□□□ 10.8
VPS39-202ENST00000348544 POLR3GO15318 223 aaPredicted RBP7.96□□□□□ -1.13
VPS39-202ENST00000348544 RPS6KB1P23443 525 aa7.96□□□□□ -1.13
VPS39-202ENST00000348544 ADD1P35611 737 aaKnown RBP7.96□□□□□ -1.13
VPS39-202ENST00000348544 ST5P78524 1137 aa7.96□□□□□ -1.13
VPS39-202ENST00000348544 NMIQ13287 307 aaPredicted RBP7.96□□□□□ -1.13
VPS39-202ENST00000348544 AOPEPQ8N6M6 819 aa7.96□□□□□ -1.13
VPS39-202ENST00000348544 ERCC4Q92889 916 aaPredicted RBP7.96□□□□□ -1.13
VPS39-202ENST00000348544 BRF1Q92994 677 aa7.96□□□□□ -1.13
VPS39-202ENST00000348544 UBXN6Q9BZV1 441 aa7.96□□□□□ -1.13
VPS39-202ENST00000348544 ORC3Q9UBD5 711 aaPredicted RBP7.96□□□□□ -1.13
VPS39-202ENST00000348544 CCDC61Q9Y6R9 512 aa7.96□□□□□ -1.13
VPS39-202ENST00000348544 CEP170BQ9Y4F5 1589 aaPredicted RBP7.96□□□□□ -1.14
VPS39-202ENST00000348544 BECN2A8MW95 431 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 SEC31AO94979 1220 aaKnown RBP7.96□□□□□ -1.14
VPS39-202ENST00000348544 CEBPZQ03701 1054 aaKnown RBP7.96□□□□□ -1.14
VPS39-202ENST00000348544 SMARCE1Q969G3 411 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 CHMP4AQ9BY43 222 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 SASH3O75995 380 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 BLOC1S2Q6QNY1 142 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 CCAR1Q8IX12 1150 aaKnown RBP7.96□□□□□ -1.14
VPS39-202ENST00000348544 TSPYL1Q9H0U9 437 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 ZCCHC17Q9NP64 241 aaKnown RBP7.96□□□□□ -1.14
VPS39-202ENST00000348544 ECHDC1Q9NTX5 307 aa7.96□□□□□ -1.14
VPS39-202ENST00000348544 NALCNQ8IZF0 1738 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 CACNA1FO60840 1977 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 A0A0D9SFI3 127 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 SOX12O15370 315 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 HTATSF1O43719 755 aaKnown RBP7.95□□□□□ -1.14
VPS39-202ENST00000348544 GSDMDP57764 484 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 MUM1L1Q5H9M0 696 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 TXNDC2Q86VQ3 553 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 ENGASEQ8NFI3 743 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 FBXW7Q969H0 707 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 ALDH8A1Q9H2A2 487 aaPredicted RBP7.95□□□□□ -1.14
VPS39-202ENST00000348544 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.95□□□□□ -1.14
VPS39-202ENST00000348544 KDRP35968 1356 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 PSDA5PKW4 1024 aaPredicted RBP7.95□□□□□ -1.14
VPS39-202ENST00000348544 PSMA5P28066 241 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 GORABQ5T7V8 394 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 CERS3Q8IU89 383 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 EPC1Q9H2F5 836 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 SNRKQ9NRH2 765 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 LCMT1Q9UIC8 334 aa7.95□□□□□ -1.14
VPS39-202ENST00000348544 CTAGE5O15320 804 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 TADA3O75528 432 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 TBC1D8O95759 1140 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 ANKRD1Q15327 319 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 TMCO3Q6UWJ1 677 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 KRBA2Q6ZNG9 492 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 EVI5LQ96CN4 794 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 XPO4Q9C0E2 1151 aaKnown RBP7.94□□□□□ -1.14
VPS39-202ENST00000348544 ANO10Q9NW15 660 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 METP08581 1390 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 MYH15Q9Y2K3 1946 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 OS9Q13438 667 aaPredicted RBP7.94□□□□□ -1.14
VPS39-202ENST00000348544 BEND3Q5T5X7 828 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 TRIM65Q6PJ69 517 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 TMC6Q7Z403 805 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 ZNF589Q86UQ0 364 aaPredicted RBP7.94□□□□□ -1.14
VPS39-202ENST00000348544 CEP57L1Q8IYX8 460 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 TXLNBQ8N3L3 684 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 IMPACTQ9P2X3 320 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 RCOR1Q9UKL0 485 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 PA2G4Q9UQ80 394 aaKnown RBP7.94□□□□□ -1.14
VPS39-202ENST00000348544 NRXN3Q9Y4C0 1643 aa7.94□□□□□ -1.14
VPS39-202ENST00000348544 FMN2Q9NZ56 1722 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 MED23Q9ULK4 1368 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 TRIM66O15016 1216 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 OAS2P29728 719 aaKnown RBP7.93□□□□□ -1.14
VPS39-202ENST00000348544 KCNJ6P48051 423 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 ETF1P62495 437 aaKnown RBP7.93□□□□□ -1.14
VPS39-202ENST00000348544 CLASRPQ8N2M8 674 aaKnown RBP7.93□□□□□ -1.14
VPS39-202ENST00000348544 IL17REQ8NFR9 667 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 UBXN4Q92575 508 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms