RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 GCC1Q96CN9 775 aa33.67■■■□□ 2.98
SSBP4-202ENST00000348495 C3orf67Q6ZVT6 689 aa33.67■■■□□ 2.98
SSBP4-202ENST00000348495 CCDC24Q8N4L8 307 aa33.67■■■□□ 2.98
SSBP4-202ENST00000348495 PARP3Q9Y6F1 533 aa33.67■■■□□ 2.98
SSBP4-202ENST00000348495 TNRC6CQ9HCJ0 1690 aaKnown RBP33.67■■■□□ 2.98
SSBP4-202ENST00000348495 SF3B3Q15393 1217 aaKnown RBP33.66■■■□□ 2.98
SSBP4-202ENST00000348495 FAM161AQ3B820 660 aa33.66■■■□□ 2.98
SSBP4-202ENST00000348495 CHMP3Q9Y3E7 222 aa33.66■■■□□ 2.98
SSBP4-202ENST00000348495 RTL9Q8NET4 1388 aa33.66■■■□□ 2.98
SSBP4-202ENST00000348495 NPHP1O15259 732 aa33.65■■■□□ 2.98
SSBP4-202ENST00000348495 GREM2Q9H772 168 aa33.65■■■□□ 2.98
SSBP4-202ENST00000348495 NOP58Q9Y2X3 529 aaKnown RBP33.65■■■□□ 2.98
SSBP4-202ENST00000348495 ST5P78524 1137 aa33.65■■■□□ 2.98
SSBP4-202ENST00000348495 COPRSQ9NQ92 184 aa33.65■■■□□ 2.98
SSBP4-202ENST00000348495 CCDC85AQ96PX6 553 aaPredicted RBP33.64■■■□□ 2.98
SSBP4-202ENST00000348495 PTPN12Q05209 780 aaKnown RBP33.63■■■□□ 2.97
SSBP4-202ENST00000348495 NLRP3Q96P20 1036 aa33.63■■■□□ 2.97
SSBP4-202ENST00000348495 CCDC152Q4G0S7 254 aa33.62■■■□□ 2.97
SSBP4-202ENST00000348495 PA2G4Q9UQ80 394 aaKnown RBP33.62■■■□□ 2.97
SSBP4-202ENST00000348495 CCDC57Q2TAC2 916 aa33.62■■■□□ 2.97
SSBP4-202ENST00000348495 EXOC6BQ9Y2D4 811 aa33.62■■■□□ 2.97
SSBP4-202ENST00000348495 SURF6O75683 361 aaKnown RBP33.61■■■□□ 2.97
SSBP4-202ENST00000348495 ITGA6P23229 1130 aa33.61■■■□□ 2.97
SSBP4-202ENST00000348495 IFIT5Q13325 482 aaKnown RBP33.61■■■□□ 2.97
SSBP4-202ENST00000348495 KLHDC4Q8TBB5 520 aa33.61■■■□□ 2.97
SSBP4-202ENST00000348495 MTFR1LQ9H019 292 aa33.6■■■□□ 2.97
SSBP4-202ENST00000348495 ANKRD31Q8N7Z5 1873 aa33.59■■■□□ 2.97
SSBP4-202ENST00000348495 PSDA5PKW4 1024 aaPredicted RBP33.59■■■□□ 2.97
SSBP4-202ENST00000348495 KLRG2A4D1S0 409 aaPredicted RBP33.58■■■□□ 2.97
SSBP4-202ENST00000348495 ZBTB7AO95365 584 aa33.58■■■□□ 2.97
SSBP4-202ENST00000348495 BRIP1Q9BX63 1249 aa33.58■■■□□ 2.97
SSBP4-202ENST00000348495 ANKRD18BA2A2Z9 1011 aa33.57■■■□□ 2.96
SSBP4-202ENST00000348495 CRY2Q49AN0 593 aa33.56■■■□□ 2.96
SSBP4-202ENST00000348495 NUCB1Q02818 461 aa33.56■■■□□ 2.96
SSBP4-202ENST00000348495 HSP90AB4PQ58FF6 505 aa33.56■■■□□ 2.96
SSBP4-202ENST00000348495 ZNF594Q96JF6 807 aaPredicted RBP33.56■■■□□ 2.96
SSBP4-202ENST00000348495 LRP5O75197 1615 aa33.55■■■□□ 2.96
SSBP4-202ENST00000348495 RAB11FIP3O75154 756 aa33.55■■■□□ 2.96
SSBP4-202ENST00000348495 SEC31BQ9NQW1 1179 aa33.55■■■□□ 2.96
SSBP4-202ENST00000348495 PDZRN3Q9UPQ7 1066 aa33.54■■■□□ 2.96
SSBP4-202ENST00000348495 SIL1Q9H173 461 aa33.53■■■□□ 2.96
SSBP4-202ENST00000348495 COL4A1P02462 1669 aa33.53■■■□□ 2.96
SSBP4-202ENST00000348495 FBXO3Q9UK99 471 aa33.53■■■□□ 2.96
SSBP4-202ENST00000348495 CIAO1O76071 339 aa33.52■■■□□ 2.96
SSBP4-202ENST00000348495 G3BP1Q13283 466 aaKnown RBP eCLIP33.52■■■□□ 2.96
SSBP4-202ENST00000348495 ANKRD45Q5TZF3 282 aa33.52■■■□□ 2.96
SSBP4-202ENST00000348495 ATG9AQ7Z3C6 839 aa33.51■■■□□ 2.96
SSBP4-202ENST00000348495 ATF5Q9Y2D1 282 aaPredicted RBP33.51■■■□□ 2.96
SSBP4-202ENST00000348495 EYA2O00167 538 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 TAF7LQ5H9L4 462 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 APBB1O00213 710 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 CHD1LQ86WJ1 897 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 ERC1Q8IUD2 1116 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 SGIP1Q9BQI5 828 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 PUS3Q9BZE2 481 aaKnown RBP33.5■■■□□ 2.95
SSBP4-202ENST00000348495 LRRCC1Q9C099 1032 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 C10orf71Q711Q0 1435 aa33.5■■■□□ 2.95
SSBP4-202ENST00000348495 SASH1O94885 1247 aa33.49■■■□□ 2.95
SSBP4-202ENST00000348495 RHPN1Q8TCX5 695 aa33.49■■■□□ 2.95
SSBP4-202ENST00000348495 PDE6BP35913 854 aa33.48■■■□□ 2.95
SSBP4-202ENST00000348495 OS9Q13438 667 aaPredicted RBP33.48■■■□□ 2.95
SSBP4-202ENST00000348495 LRRC24Q50LG9 513 aa33.48■■■□□ 2.95
SSBP4-202ENST00000348495 KIF1BPQ96EK5 621 aa33.48■■■□□ 2.95
SSBP4-202ENST00000348495 CDC5LQ99459 802 aaKnown RBP33.48■■■□□ 2.95
SSBP4-202ENST00000348495 HOXA10P31260 410 aaPredicted RBP33.48■■■□□ 2.95
SSBP4-202ENST00000348495 TAF1P21675 1872 aa33.47■■■□□ 2.95
SSBP4-202ENST00000348495 IL15P40933 162 aaPredicted RBP33.47■■■□□ 2.95
SSBP4-202ENST00000348495 DDX46Q7L014 1031 aaKnown RBP33.47■■■□□ 2.95
SSBP4-202ENST00000348495 RIPOR2Q9Y4F9 1068 aa33.47■■■□□ 2.95
SSBP4-202ENST00000348495 LDHAL6AQ6ZMR3 332 aa33.46■■■□□ 2.95
SSBP4-202ENST00000348495 SMARCA5O60264 1052 aaPredicted RBP33.45■■■□□ 2.95
SSBP4-202ENST00000348495 POLD1P28340 1107 aa33.45■■■□□ 2.95
SSBP4-202ENST00000348495 RPGRQ92834 1020 aaKnown RBP33.45■■■□□ 2.95
SSBP4-202ENST00000348495 CELF1Q92879 486 aaKnown RBP33.45■■■□□ 2.95
SSBP4-202ENST00000348495 LNPKQ9C0E8 428 aa33.45■■■□□ 2.95
SSBP4-202ENST00000348495 COL11A2P13942 1736 aaPredicted RBP33.45■■■□□ 2.95
SSBP4-202ENST00000348495 SRGNP10124 158 aa33.44■■■□□ 2.94
SSBP4-202ENST00000348495 IGHMBP2P38935 993 aaKnown RBP33.44■■■□□ 2.94
SSBP4-202ENST00000348495 SKAP1Q86WV1 359 aa33.44■■■□□ 2.94
SSBP4-202ENST00000348495 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP33.44■■■□□ 2.94
SSBP4-202ENST00000348495 ANKRD18AQ8IVF6 992 aa33.43■■■□□ 2.94
SSBP4-202ENST00000348495 SPEF2Q9C093 1822 aa33.43■■■□□ 2.94
SSBP4-202ENST00000348495 KIF13BQ9NQT8 1826 aa33.43■■■□□ 2.94
SSBP4-202ENST00000348495 PTGER2P43116 358 aa33.42■■■□□ 2.94
SSBP4-202ENST00000348495 RPS8P62241 208 aaKnown RBP33.42■■■□□ 2.94
SSBP4-202ENST00000348495 PDE4AP27815 886 aa33.42■■■□□ 2.94
SSBP4-202ENST00000348495 GRAPQ13588 217 aa33.42■■■□□ 2.94
SSBP4-202ENST00000348495 GRAPLQ8TC17 118 aaPredicted RBP33.42■■■□□ 2.94
SSBP4-202ENST00000348495 RBM17Q96I25 401 aaKnown RBP33.42■■■□□ 2.94
SSBP4-202ENST00000348495 CRAMP1Q96RY5 1269 aa33.42■■■□□ 2.94
SSBP4-202ENST00000348495 MPHOSPH8Q99549 860 aa33.42■■■□□ 2.94
SSBP4-202ENST00000348495 CNNM1Q9NRU3 951 aa33.42■■■□□ 2.94
SSBP4-202ENST00000348495 IL1RAPL2Q9NP60 686 aa33.41■■■□□ 2.94
SSBP4-202ENST00000348495 BSDC1Q9NW68 430 aaPredicted RBP33.41■■■□□ 2.94
SSBP4-202ENST00000348495 TFCP2Q12800 502 aa33.4■■■□□ 2.94
SSBP4-202ENST00000348495 ZBTB47Q9UFB7 747 aaPredicted RBP33.4■■■□□ 2.94
SSBP4-202ENST00000348495 NPR1P16066 1061 aa33.39■■■□□ 2.94
SSBP4-202ENST00000348495 C2CD5Q86YS7 1000 aa33.37■■■□□ 2.93
SSBP4-202ENST00000348495 C16orf71Q8IYS4 520 aaPredicted RBP33.37■■■□□ 2.93
SSBP4-202ENST00000348495 VGLL2Q8N8G2 317 aa33.37■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms