RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 ANKRD36CQ5JPF3 1778 aa27.24■■□□□ 1.95
PDLIM2-203ENST00000339162 IFIT5Q13325 482 aaKnown RBP27.24■■□□□ 1.95
PDLIM2-203ENST00000339162 SUSD4Q5VX71 490 aa27.24■■□□□ 1.95
PDLIM2-203ENST00000339162 TAF7LQ5H9L4 462 aa27.23■■□□□ 1.95
PDLIM2-203ENST00000339162 CTSWP56202 376 aa27.22■■□□□ 1.95
PDLIM2-203ENST00000339162 CIAO1O76071 339 aa27.21■■□□□ 1.95
PDLIM2-203ENST00000339162 ITGA6P23229 1130 aa27.21■■□□□ 1.95
PDLIM2-203ENST00000339162 ATP5JP18859 108 aa27.21■■□□□ 1.95
PDLIM2-203ENST00000339162 SEPT12Q8IYM1 358 aa27.2■■□□□ 1.95
PDLIM2-203ENST00000339162 FSD1Q9BTV5 496 aa27.2■■□□□ 1.95
PDLIM2-203ENST00000339162 FOXD4L1Q9NU39 408 aa27.2■■□□□ 1.95
PDLIM2-203ENST00000339162 TRPC5Q9UL62 973 aaPredicted RBP27.2■■□□□ 1.95
PDLIM2-203ENST00000339162 K7ELQ4 463 aaPredicted RBP27.2■■□□□ 1.94
PDLIM2-203ENST00000339162 HCLS1P14317 486 aaPredicted RBP27.2■■□□□ 1.94
PDLIM2-203ENST00000339162 DNAJC2Q99543 621 aaKnown RBP27.2■■□□□ 1.94
PDLIM2-203ENST00000339162 NIP7Q9Y221 180 aaKnown RBP eCLIP27.2■■□□□ 1.94
PDLIM2-203ENST00000339162 RREB1Q92766 1687 aa27.19■■□□□ 1.94
PDLIM2-203ENST00000339162 FAM227BQ96M60 508 aa27.19■■□□□ 1.94
PDLIM2-203ENST00000339162 A0A1B0GUL7 405 aa27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 MCCP23508 829 aa27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 NFKBIBQ15653 356 aa27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 CEP126Q9P2H0 1117 aa27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 PDE8AO60658 829 aa27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 COL5A3P25940 1745 aaPredicted RBP27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 CICQ96RK0 1608 aaPredicted RBP27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 LSG1Q9H089 658 aaKnown RBP27.18■■□□□ 1.94
PDLIM2-203ENST00000339162 QTRT2Q9H974 415 aaKnown RBP27.17■■□□□ 1.94
PDLIM2-203ENST00000339162 ATRNO75882 1429 aa27.17■■□□□ 1.94
PDLIM2-203ENST00000339162 NMIQ13287 307 aaPredicted RBP27.17■■□□□ 1.94
PDLIM2-203ENST00000339162 GPR108Q9NPR9 543 aa27.17■■□□□ 1.94
PDLIM2-203ENST00000339162 BTAF1O14981 1849 aa27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 KIAA1211Q6ZU35 1233 aa27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 RUFY2Q8WXA3 655 aa27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 UTP14AQ9BVJ6 771 aaKnown RBP27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 EP400Q96L91 3159 aa27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 SH3TC1Q8TE82 1336 aa27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 LDHAL6AQ6ZMR3 332 aa27.16■■□□□ 1.94
PDLIM2-203ENST00000339162 RAD50Q92878 1312 aa27.15■■□□□ 1.94
PDLIM2-203ENST00000339162 ANKRD18BA2A2Z9 1011 aa27.15■■□□□ 1.94
PDLIM2-203ENST00000339162 ONECUT3O60422 494 aaPredicted RBP27.15■■□□□ 1.94
PDLIM2-203ENST00000339162 CCNL1Q9UK58 526 aaPredicted RBP27.15■■□□□ 1.94
PDLIM2-203ENST00000339162 ZNF609O15014 1411 aa27.15■■□□□ 1.94
PDLIM2-203ENST00000339162 CHGBP05060 677 aa27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 HSP90AA1P07900 732 aaKnown RBP27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 A0A0D9SFI3 127 aa27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 HSPA4P34932 840 aa27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 NEK4P51957 841 aa27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 PTH1RQ03431 593 aa27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 DDX46Q7L014 1031 aaKnown RBP27.14■■□□□ 1.94
PDLIM2-203ENST00000339162 HAUS7Q99871 368 aa27.13■■□□□ 1.93
PDLIM2-203ENST00000339162 ST18O60284 1047 aa27.13■■□□□ 1.93
PDLIM2-203ENST00000339162 FRAT2O75474 233 aaPredicted RBP27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 ADORA1P30542 326 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 CNNM1Q9NRU3 951 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 FBXO3Q9UK99 471 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 RIPOR2Q9Y4F9 1068 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 CNTNAP4Q9C0A0 1308 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 PARP10Q53GL7 1025 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 METTL24Q5JXM2 366 aa27.12■■□□□ 1.93
PDLIM2-203ENST00000339162 NHSQ6T4R5 1651 aa27.11■■□□□ 1.93
PDLIM2-203ENST00000339162 NTSR2O95665 410 aa27.11■■□□□ 1.93
PDLIM2-203ENST00000339162 BICDL1Q6ZP65 573 aa27.11■■□□□ 1.93
PDLIM2-203ENST00000339162 ZNF652Q9Y2D9 606 aa27.11■■□□□ 1.93
PDLIM2-203ENST00000339162 HIP1O00291 1037 aa27.1■■□□□ 1.93
PDLIM2-203ENST00000339162 GNPATO15228 680 aa27.1■■□□□ 1.93
PDLIM2-203ENST00000339162 ANAPC15P60006 121 aa27.1■■□□□ 1.93
PDLIM2-203ENST00000339162 UPF3BQ9BZI7 483 aaKnown RBP27.1■■□□□ 1.93
PDLIM2-203ENST00000339162 MYH3P11055 1940 aa27.1■■□□□ 1.93
PDLIM2-203ENST00000339162 AMIGO3Q86WK7 504 aa27.1■■□□□ 1.93
PDLIM2-203ENST00000339162 GOLIM4O00461 696 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 RASEFQ8IZ41 740 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 XAGE2Q96GT9 111 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 ZNF831Q5JPB2 1677 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 EPB41L2O43491 1005 aaKnown RBP27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 SEC31BQ9NQW1 1179 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 SRP68Q9UHB9 627 aaKnown RBP27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 AKAP2Q9Y2D5 859 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 RIC1Q4ADV7 1423 aa27.09■■□□□ 1.93
PDLIM2-203ENST00000339162 GORABQ5T7V8 394 aa27.08■■□□□ 1.93
PDLIM2-203ENST00000339162 IFIT1P09914 478 aaKnown RBP27.08■■□□□ 1.92
PDLIM2-203ENST00000339162 CHMP5Q9NZZ3 219 aa27.08■■□□□ 1.92
PDLIM2-203ENST00000339162 SNX14Q9Y5W7 946 aa27.08■■□□□ 1.92
PDLIM2-203ENST00000339162 USPL1Q5W0Q7 1092 aa27.07■■□□□ 1.92
PDLIM2-203ENST00000339162 CLEC4GQ6UXB4 293 aa27.07■■□□□ 1.92
PDLIM2-203ENST00000339162 ZNF589Q86UQ0 364 aaPredicted RBP27.07■■□□□ 1.92
PDLIM2-203ENST00000339162 DDIT3P35638 169 aa27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 PAG1Q9NWQ8 432 aa27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 CCDC171Q6TFL3 1326 aa27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 RPS6KA4O75676 772 aa27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 SLFNL1Q499Z3 407 aa27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 NOL8Q76FK4 1167 aaKnown RBP27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 HELBQ8NG08 1087 aaPredicted RBP27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 BCL2L12Q9HB09 334 aa27.06■■□□□ 1.92
PDLIM2-203ENST00000339162 ATP2B3Q16720 1220 aa27.05■■□□□ 1.92
PDLIM2-203ENST00000339162 RC3H1Q5TC82 1133 aaKnown RBP27.05■■□□□ 1.92
PDLIM2-203ENST00000339162 PRPF40BQ6NWY9 871 aaKnown RBP27.05■■□□□ 1.92
PDLIM2-203ENST00000339162 AK7Q96M32 723 aa27.05■■□□□ 1.92
PDLIM2-203ENST00000339162 SEC62Q99442 399 aaKnown RBP27.05■■□□□ 1.92
PDLIM2-203ENST00000339162 SNRKQ9NRH2 765 aa27.05■■□□□ 1.92
PDLIM2-203ENST00000339162 TBC1D9BQ66K14 1250 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms