RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 TNNI3KQ59H18 835 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 SLC27A3Q5K4L6 730 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 CASC1Q6TDU7 716 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 DDRGK1Q96HY6 314 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 BCL2L12Q9HB09 334 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 GPR108Q9NPR9 543 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 FPGT-TNNI3KV9GXZ4 949 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 RXRBP28702 533 aa18.92■□□□□ 0.62
LIMS1-202ENST00000338045 IFIT5Q13325 482 aaKnown RBP18.92■□□□□ 0.62
LIMS1-202ENST00000338045 ZNF594Q96JF6 807 aaPredicted RBP18.92■□□□□ 0.62
LIMS1-202ENST00000338045 CCDC8Q9H0W5 538 aaPredicted RBP18.92■□□□□ 0.62
LIMS1-202ENST00000338045 RBM25P49756 843 aaKnown RBP18.91■□□□□ 0.62
LIMS1-202ENST00000338045 AMIGO3Q86WK7 504 aa18.91■□□□□ 0.62
LIMS1-202ENST00000338045 FBXO41Q8TF61 875 aa18.91■□□□□ 0.62
LIMS1-202ENST00000338045 TLR7Q9NYK1 1049 aaKnown RBP18.91■□□□□ 0.62
LIMS1-202ENST00000338045 TRIM6-TRIM34B2RNG4 842 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 MSH5O43196 834 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 LRRC24Q50LG9 513 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 GREM2Q9H772 168 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 LAMB2P55268 1798 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 HSP90B1P14625 803 aaKnown RBP18.9■□□□□ 0.62
LIMS1-202ENST00000338045 ITGA6P23229 1130 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 SMIM5Q71RC9 77 aa18.9■□□□□ 0.62
LIMS1-202ENST00000338045 RGS17Q9UGC6 210 aaPredicted RBP18.9■□□□□ 0.62
LIMS1-202ENST00000338045 DBNLQ9UJU6 430 aaKnown RBP18.9■□□□□ 0.62
LIMS1-202ENST00000338045 USPL1Q5W0Q7 1092 aa18.89■□□□□ 0.61
LIMS1-202ENST00000338045 ARHGEF1Q92888 912 aaKnown RBP18.89■□□□□ 0.61
LIMS1-202ENST00000338045 RILPL2Q969X0 211 aa18.89■□□□□ 0.61
LIMS1-202ENST00000338045 PUS3Q9BZE2 481 aaKnown RBP18.89■□□□□ 0.61
LIMS1-202ENST00000338045 DDX60Q8IY21 1712 aaKnown RBP18.89■□□□□ 0.61
LIMS1-202ENST00000338045 ADRA2BP18089 450 aa18.88■□□□□ 0.61
LIMS1-202ENST00000338045 CHMLP26374 656 aa18.88■□□□□ 0.61
LIMS1-202ENST00000338045 CNTROBQ8N137 903 aa18.88■□□□□ 0.61
LIMS1-202ENST00000338045 CCDC85AQ96PX6 553 aaPredicted RBP18.88■□□□□ 0.61
LIMS1-202ENST00000338045 ANKRD18BA2A2Z9 1011 aa18.88■□□□□ 0.61
LIMS1-202ENST00000338045 ZPR1O75312 459 aa18.88■□□□□ 0.61
LIMS1-202ENST00000338045 TBC1D9BQ66K14 1250 aa18.88■□□□□ 0.61
LIMS1-202ENST00000338045 SRP68Q9UHB9 627 aaKnown RBP18.88■□□□□ 0.61
LIMS1-202ENST00000338045 C4AP0C0L4 1744 aa18.87■□□□□ 0.61
LIMS1-202ENST00000338045 RTL9Q8NET4 1388 aa18.87■□□□□ 0.61
LIMS1-202ENST00000338045 LRP5O75197 1615 aa18.87■□□□□ 0.61
LIMS1-202ENST00000338045 HCLS1P14317 486 aaPredicted RBP18.87■□□□□ 0.61
LIMS1-202ENST00000338045 HMGB2P26583 209 aaKnown RBP18.87■□□□□ 0.61
LIMS1-202ENST00000338045 TAF7LQ5H9L4 462 aa18.87■□□□□ 0.61
LIMS1-202ENST00000338045 COL24A1Q17RW2 1714 aa18.87■□□□□ 0.61
LIMS1-202ENST00000338045 ZNF609O15014 1411 aa18.87■□□□□ 0.61
LIMS1-202ENST00000338045 FAM177BA6PVY3 158 aa18.86■□□□□ 0.61
LIMS1-202ENST00000338045 TRAPPC3LQ5T215 181 aa18.86■□□□□ 0.61
LIMS1-202ENST00000338045 RIPOR2Q9Y4F9 1068 aa18.86■□□□□ 0.61
LIMS1-202ENST00000338045 UBR3Q6ZT12 1888 aa18.86■□□□□ 0.61
LIMS1-202ENST00000338045 ATP5JP18859 108 aa18.86■□□□□ 0.61
LIMS1-202ENST00000338045 CEP126Q9P2H0 1117 aa18.86■□□□□ 0.61
LIMS1-202ENST00000338045 AK9Q5TCS8 1911 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 PLSCR1O15162 318 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 REC8O95072 547 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 MAP4K4O95819 1239 aaPredicted RBP18.85■□□□□ 0.61
LIMS1-202ENST00000338045 PROM2Q8N271 834 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 EVI5LQ96CN4 794 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 DBNDD2Q9BQY9 259 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 ESYT1Q9BSJ8 1104 aa18.85■□□□□ 0.61
LIMS1-202ENST00000338045 RFC4P35249 363 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 TXNRD1Q16881 649 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 RIC1Q4ADV7 1423 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 USP26Q9BXU7 913 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 CCDC152Q4G0S7 254 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 SLC10A5Q5PT55 438 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 LDHAL6AQ6ZMR3 332 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 SETDB2Q96T68 719 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 NYXQ9GZU5 481 aa18.84■□□□□ 0.61
LIMS1-202ENST00000338045 A0A1B0GUL7 405 aa18.83■□□□□ 0.6
LIMS1-202ENST00000338045 POTEAQ6S8J7 498 aa18.83■□□□□ 0.6
LIMS1-202ENST00000338045 AKAP2Q9Y2D5 859 aa18.83■□□□□ 0.6
LIMS1-202ENST00000338045 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.82■□□□□ 0.6
LIMS1-202ENST00000338045 PHF14O94880 888 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 SSFA2P28290 1259 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 TIMM10P62072 90 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 ERFEQ4G0M1 354 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 BOLA2Q9H3K6 86 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 SF3B3Q15393 1217 aaKnown RBP18.82■□□□□ 0.6
LIMS1-202ENST00000338045 BICDL1Q6ZP65 573 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 VGLL2Q8N8G2 317 aa18.82■□□□□ 0.6
LIMS1-202ENST00000338045 KIF2CQ99661 725 aa18.81■□□□□ 0.6
LIMS1-202ENST00000338045 ABCC12Q96J65 1359 aa18.8■□□□□ 0.6
LIMS1-202ENST00000338045 EPB41L2O43491 1005 aaKnown RBP18.8■□□□□ 0.6
LIMS1-202ENST00000338045 NEUROD6Q96NK8 337 aa18.8■□□□□ 0.6
LIMS1-202ENST00000338045 CNNM1Q9NRU3 951 aa18.8■□□□□ 0.6
LIMS1-202ENST00000338045 METTL24Q5JXM2 366 aa18.8■□□□□ 0.6
LIMS1-202ENST00000338045 UBE2Q2Q8WVN8 375 aa18.8■□□□□ 0.6
LIMS1-202ENST00000338045 HAUS7Q99871 368 aa18.8■□□□□ 0.6
LIMS1-202ENST00000338045 APBA3O96018 575 aa18.79■□□□□ 0.6
LIMS1-202ENST00000338045 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.79■□□□□ 0.6
LIMS1-202ENST00000338045 SEC31BQ9NQW1 1179 aa18.79■□□□□ 0.6
LIMS1-202ENST00000338045 SGSM2O43147 1006 aa18.78■□□□□ 0.6
LIMS1-202ENST00000338045 TPTE2Q6XPS3 522 aa18.78■□□□□ 0.6
LIMS1-202ENST00000338045 NBPF5PQ86XG9 351 aaPredicted RBP18.78■□□□□ 0.6
LIMS1-202ENST00000338045 IL25Q9H293 177 aa18.78■□□□□ 0.6
LIMS1-202ENST00000338045 MROH5Q6ZUA9 1318 aa18.78■□□□□ 0.6
LIMS1-202ENST00000338045 CARMIL3Q8ND23 1372 aa18.78■□□□□ 0.6
LIMS1-202ENST00000338045 TNS1Q9HBL0 1735 aaKnown RBP18.78■□□□□ 0.6
LIMS1-202ENST00000338045 HIP1O00291 1037 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms