RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 ITPRIPQ8IWB1 547 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 CNKSR1Q969H4 720 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 RBM17Q96I25 401 aaKnown RBP19.32■□□□□ 0.68
SEC13-201ENST00000337354 ARFGEF1Q9Y6D6 1849 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 ZBTB7BO15156 539 aaPredicted RBP19.32■□□□□ 0.68
SEC13-201ENST00000337354 CSF1RP07333 972 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 YBX3P16989 372 aaKnown RBP eCLIP19.32■□□□□ 0.689e-10■■□□□ 14.4
SEC13-201ENST00000337354 CTSWP56202 376 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 MVPQ14764 893 aaKnown RBP19.32■□□□□ 0.68
SEC13-201ENST00000337354 C3orf67Q6ZVT6 689 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 TTLL11Q8NHH1 800 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 ZNF622Q969S3 477 aaKnown RBP eCLIP19.32■□□□□ 0.68
SEC13-201ENST00000337354 CRAMP1Q96RY5 1269 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 DDX19BQ9UMR2 479 aa19.32■□□□□ 0.68
SEC13-201ENST00000337354 DDX46Q7L014 1031 aaKnown RBP19.31■□□□□ 0.68
SEC13-201ENST00000337354 TTLL6Q8N841 843 aa19.31■□□□□ 0.68
SEC13-201ENST00000337354 MEIS3Q99687 375 aa19.31■□□□□ 0.68
SEC13-201ENST00000337354 CENPBP07199 599 aaPredicted RBP19.3■□□□□ 0.68
SEC13-201ENST00000337354 FOXO4P98177 505 aa19.3■□□□□ 0.68
SEC13-201ENST00000337354 SUCLG2Q96I99 432 aa19.3■□□□□ 0.68
SEC13-201ENST00000337354 SUPT16HQ9Y5B9 1047 aaKnown RBP19.3■□□□□ 0.68
SEC13-201ENST00000337354 DALRD3Q5D0E6 543 aaKnown RBP19.29■□□□□ 0.68
SEC13-201ENST00000337354 KAZALD1Q96I82 304 aa19.29■□□□□ 0.68
SEC13-201ENST00000337354 COG6Q9Y2V7 657 aa19.29■□□□□ 0.68
SEC13-201ENST00000337354 GRIN3BO60391 1043 aa19.28■□□□□ 0.68
SEC13-201ENST00000337354 BBOX1O75936 387 aa19.28■□□□□ 0.68
SEC13-201ENST00000337354 GNAI2P04899 355 aa19.28■□□□□ 0.68
SEC13-201ENST00000337354 RABL6Q3YEC7 729 aaPredicted RBP19.28■□□□□ 0.68
SEC13-201ENST00000337354 C20orf194Q5TEA3 1177 aa19.28■□□□□ 0.68
SEC13-201ENST00000337354 BCS1LQ9Y276 419 aa19.28■□□□□ 0.68
SEC13-201ENST00000337354 RTL9Q8NET4 1388 aa19.27■□□□□ 0.68
SEC13-201ENST00000337354 YY1P25490 414 aa19.27■□□□□ 0.68
SEC13-201ENST00000337354 LMBR1LQ6UX01 489 aa19.27■□□□□ 0.68
SEC13-201ENST00000337354 GRAPQ13588 217 aa19.26■□□□□ 0.67
SEC13-201ENST00000337354 EPHA10Q5JZY3 1008 aa19.26■□□□□ 0.67
SEC13-201ENST00000337354 TMC4Q7Z404 712 aa19.26■□□□□ 0.67
SEC13-201ENST00000337354 GRAPLQ8TC17 118 aaPredicted RBP19.26■□□□□ 0.67
SEC13-201ENST00000337354 CDC5LQ99459 802 aaKnown RBP19.26■□□□□ 0.67
SEC13-201ENST00000337354 BICC1Q9H694 974 aaKnown RBP19.26■□□□□ 0.67
SEC13-201ENST00000337354 TNRC6CQ9HCJ0 1690 aaKnown RBP19.26■□□□□ 0.67
SEC13-201ENST00000337354 RPS8P62241 208 aaKnown RBP19.25■□□□□ 0.67
SEC13-201ENST00000337354 IFIT5Q13325 482 aaKnown RBP19.25■□□□□ 0.67
SEC13-201ENST00000337354 CCDC57Q2TAC2 916 aa19.25■□□□□ 0.67
SEC13-201ENST00000337354 GREM2Q9H772 168 aa19.25■□□□□ 0.67
SEC13-201ENST00000337354 ANKRD18BA2A2Z9 1011 aa19.24■□□□□ 0.67
SEC13-201ENST00000337354 ITGA6P23229 1130 aa19.24■□□□□ 0.67
SEC13-201ENST00000337354 PRPF40BQ6NWY9 871 aaKnown RBP19.24■□□□□ 0.67
SEC13-201ENST00000337354 TMX4Q9H1E5 349 aaPredicted RBP19.24■□□□□ 0.67
SEC13-201ENST00000337354 LRRFIP2Q9Y608 721 aaKnown RBP19.24■□□□□ 0.67
SEC13-201ENST00000337354 GRIPAP1Q4V328 841 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 SOGA3Q5TF21 947 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 CC2D2BQ6DHV5 1058 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 ANKRD44Q8N8A2 993 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 CCDC85AQ96PX6 553 aaPredicted RBP19.23■□□□□ 0.67
SEC13-201ENST00000337354 SEC31BQ9NQW1 1179 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 ZBTB40Q9NUA8 1239 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 CHMP3Q9Y3E7 222 aa19.23■□□□□ 0.67
SEC13-201ENST00000337354 MTX1Q13505 466 aa19.22■□□□□ 0.67
SEC13-201ENST00000337354 FAM161AQ3B820 660 aa19.22■□□□□ 0.67
SEC13-201ENST00000337354 ANKRD18AQ8IVF6 992 aa19.22■□□□□ 0.67
SEC13-201ENST00000337354 C7orf43Q8WVR3 580 aa19.22■□□□□ 0.67
SEC13-201ENST00000337354 CELF1Q92879 486 aaKnown RBP19.22■□□□□ 0.67
SEC13-201ENST00000337354 PPEF1O14829 653 aaPredicted RBP19.21■□□□□ 0.67
SEC13-201ENST00000337354 SP8Q8IXZ3 490 aa19.21■□□□□ 0.67
SEC13-201ENST00000337354 ATP6V0A2Q9Y487 856 aa19.21■□□□□ 0.67
SEC13-201ENST00000337354 GOLGB1Q14789 3259 aaKnown RBP19.21■□□□□ 0.67
SEC13-201ENST00000337354 IGHMBP2P38935 993 aaKnown RBP19.2■□□□□ 0.66
SEC13-201ENST00000337354 AAMPQ13685 434 aa19.2■□□□□ 0.66
SEC13-201ENST00000337354 BSDC1Q9NW68 430 aaPredicted RBP19.2■□□□□ 0.66
SEC13-201ENST00000337354 C21orf2O43822 256 aa19.19■□□□□ 0.66
SEC13-201ENST00000337354 MPHOSPH8Q99549 860 aa19.19■□□□□ 0.66
SEC13-201ENST00000337354 LAMB2P55268 1798 aa19.19■□□□□ 0.66
SEC13-201ENST00000337354 ATP8B2P98198 1209 aa19.19■□□□□ 0.66
SEC13-201ENST00000337354 TAF7LQ5H9L4 462 aa19.19■□□□□ 0.66
SEC13-201ENST00000337354 RPAP2Q8IXW5 612 aaPredicted RBP19.19■□□□□ 0.66
SEC13-201ENST00000337354 SRGAP3O43295 1099 aa19.18■□□□□ 0.66
SEC13-201ENST00000337354 RTKN2Q8IZC4 609 aa19.18■□□□□ 0.66
SEC13-201ENST00000337354 DDX60Q8IY21 1712 aaKnown RBP19.17■□□□□ 0.66
SEC13-201ENST00000337354 SLX4Q8IY92 1834 aa19.17■□□□□ 0.66
SEC13-201ENST00000337354 CCDC93Q567U6 631 aa19.17■□□□□ 0.66
SEC13-201ENST00000337354 LDHAL6AQ6ZMR3 332 aa19.17■□□□□ 0.66
SEC13-201ENST00000337354 ARHGAP27Q6ZUM4 889 aa19.17■□□□□ 0.66
SEC13-201ENST00000337354 CRBNQ96SW2 442 aa19.17■□□□□ 0.66
SEC13-201ENST00000337354 FBXO3Q9UK99 471 aa19.17■□□□□ 0.66
SEC13-201ENST00000337354 RFX5P48382 616 aaPredicted RBP19.16■□□□□ 0.66
SEC13-201ENST00000337354 C1orf115Q9H7X2 142 aa19.16■□□□□ 0.66
SEC13-201ENST00000337354 ZNF219Q9P2Y4 722 aaPredicted RBP19.16■□□□□ 0.66
SEC13-201ENST00000337354 COPRSQ9NQ92 184 aa19.15■□□□□ 0.66
SEC13-201ENST00000337354 CCDC88AQ3V6T2 1871 aa19.14■□□□□ 0.66
SEC13-201ENST00000337354 PTPN12Q05209 780 aaKnown RBP19.14■□□□□ 0.65
SEC13-201ENST00000337354 CEP85Q6P2H3 762 aa19.14■□□□□ 0.65
SEC13-201ENST00000337354 SSH3Q8TE77 659 aa19.14■□□□□ 0.65
SEC13-201ENST00000337354 ZNF594Q96JF6 807 aaPredicted RBP19.14■□□□□ 0.65
SEC13-201ENST00000337354 CNNM1Q9NRU3 951 aa19.14■□□□□ 0.65
SEC13-201ENST00000337354 MINPP1Q9UNW1 487 aa19.14■□□□□ 0.65
SEC13-201ENST00000337354 UTRNP46939 3433 aa19.14■□□□□ 0.65
SEC13-201ENST00000337354 SBF1O95248 1867 aa19.13■□□□□ 0.65
SEC13-201ENST00000337354 PNMA6EA0A0J9YXQ4 647 aa19.13■□□□□ 0.65
SEC13-201ENST00000337354 POLA2Q14181 598 aa19.13■□□□□ 0.65
SEC13-201ENST00000337354 MPNDQ8N594 471 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms