RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TTC21AQ8NDW8 1320 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 KIF2AO00139 706 aaPredicted RBP14.44□□□□□ -0.1
SDC3-201ENST00000336798 NCOA7Q8NI08 942 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 UTP14AQ9BVJ6 771 aaKnown RBP14.44□□□□□ -0.1
SDC3-201ENST00000336798 JAG2Q9Y219 1238 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 CASKIN1Q8WXD9 1431 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 N4BP3O15049 544 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 CYP7A1P22680 504 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 KIAA0753Q2KHM9 967 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 SLC4A4Q9Y6R1 1079 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 GIGYF2Q6Y7W6 1299 aaKnown RBP14.44□□□□□ -0.1
SDC3-201ENST00000336798 PPP1R42Q7Z4L9 355 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 TBC1D5Q92609 795 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 FERMT1Q9BQL6 677 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 GIMAP6Q6P9H5 292 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 FAM114A1Q8IWE2 563 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 CRNKL1Q9BZJ0 848 aaKnown RBP14.43□□□□□ -0.1
SDC3-201ENST00000336798 DMRT2Q9Y5R5 561 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 PI4KAP2A4QPH2 592 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 CTAGE5O15320 804 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 LDHCP07864 332 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 STAT6P42226 847 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 GNG11P61952 73 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 IFIT1BQ5T764 474 aaKnown RBP14.43□□□□□ -0.1
SDC3-201ENST00000336798 PI4KAP1Q8N8J0 262 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 KLF18A0A0U1RQI7 1052 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 CCDC63Q8NA47 563 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 EEF2P13639 858 aaKnown RBP14.43□□□□□ -0.1
SDC3-201ENST00000336798 WTAPQ15007 396 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 TCHPQ9BT92 498 aa14.43□□□□□ -0.1
SDC3-201ENST00000336798 KRT13P13646 458 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 ECHDC1Q9NTX5 307 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 AKR1B10O60218 316 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 GSTA5Q7RTV2 222 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 MICALCLQ6ZW33 695 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 MARCKSP29966 332 aaPredicted RBP14.42□□□□□ -0.1
SDC3-201ENST00000336798 RPGRIP1LQ68CZ1 1315 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 FBXO31Q5XUX0 539 aaPredicted RBP14.42□□□□□ -0.1
SDC3-201ENST00000336798 TBC1D9Q6ZT07 1266 aa14.42□□□□□ -0.1
SDC3-201ENST00000336798 MPHOSPH6Q99547 160 aaKnown RBP14.42□□□□□ -0.1
SDC3-201ENST00000336798 SMIM23A6NLE4 172 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 ATP6V1AP38606 617 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 CCDC102BQ68D86 513 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 CEP112Q8N8E3 955 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 RIMBP2O15034 1052 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 ATP2B3Q16720 1220 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 HSF2BPO75031 334 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 CCDC50Q8IVM0 306 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 RAB3IL1Q8TBN0 382 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 BRF1Q92994 677 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 SPAG5Q96R06 1193 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 PLIN2Q99541 437 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 TBC1D2Q9BYX2 928 aa14.41□□□□□ -0.1
SDC3-201ENST00000336798 ALDH1L2Q3SY69 923 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 DDX19AQ9NUU7 478 aaKnown RBP14.4□□□□□ -0.1
SDC3-201ENST00000336798 TRIM27P14373 513 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 PSMC4P43686 418 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 CEP135Q66GS9 1140 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 FBF1Q8TES7 1133 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 ZNF165P49910 485 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 CHST3Q7LGC8 479 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 ANKRD24Q8TF21 1146 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 IQCGQ9H095 443 aaKnown RBP14.4□□□□□ -0.1
SDC3-201ENST00000336798 NDC80O14777 642 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 SYKP43405 635 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 SLC39A6Q13433 755 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 SMARCC2Q8TAQ2 1214 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 PKD2L1Q9P0L9 805 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 CCDC152Q4G0S7 254 aa14.4□□□□□ -0.1
SDC3-201ENST00000336798 PROCA1Q8NCQ7 364 aaPredicted RBP14.4□□□□□ -0.1
SDC3-201ENST00000336798 IFNL2Q8IZJ0 200 aa14.39□□□□□ -0.11
SDC3-201ENST00000336798 ALG1Q9BT22 464 aa14.39□□□□□ -0.11
SDC3-201ENST00000336798 NAPAP54920 295 aa14.39□□□□□ -0.11
SDC3-201ENST00000336798 UBASH3AP57075 661 aa14.39□□□□□ -0.11
SDC3-201ENST00000336798 SPECC1LQ69YQ0 1117 aa14.39□□□□□ -0.11
SDC3-201ENST00000336798 ERMNQ8TAM6 284 aa14.39□□□□□ -0.11
SDC3-201ENST00000336798 GSTO1P78417 241 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 SETDB2Q96T68 719 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 CNPY2Q9Y2B0 182 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 C6orf163Q5TEZ5 329 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 ERICH3Q5RHP9 1530 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 MCM5P33992 734 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 ASIC1P78348 528 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 PLCB3Q01970 1234 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 CHPF2Q9P2E5 772 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 GSDMDP57764 484 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 CAPZA3Q96KX2 299 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 CCDC155Q8N6L0 562 aa14.38□□□□□ -0.11
SDC3-201ENST00000336798 PLEKHH1Q9ULM0 1364 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 ZBTB43O43298 467 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 DHX58Q96C10 678 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 MBIPQ9NS73 344 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 HCLS1P14317 486 aaPredicted RBP14.37□□□□□ -0.11
SDC3-201ENST00000336798 C8orf37Q96NL8 207 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 CCDC160A6NGH7 325 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 MIGA1Q8NAN2 632 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 HDAC9Q9UKV0 1011 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 BMS1Q14692 1282 aaKnown RBP14.37□□□□□ -0.11
SDC3-201ENST00000336798 RTN1Q16799 776 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 LRSAM1Q6UWE0 723 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms