RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 OTUD7AQ8TE49 926 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 GPR108Q9NPR9 543 aa18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 TSHZ2Q9NRE2 1034 aa18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 EYA2O00167 538 aa18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 APBB1O00213 710 aa18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 PDE1AP54750 535 aa18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 IFIT5Q13325 482 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 SF3B3Q15393 1217 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 ATG9AQ7Z3C6 839 aa18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 CLASRPQ8N2M8 674 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-202ENST00000334448 MYH3P11055 1940 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 MX1P20591 662 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 NFIXQ14938 502 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 TTC22Q5TAA0 569 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 CCDC125Q86Z20 511 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 KLHDC4Q8TBB5 520 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 ABCC12Q96J65 1359 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 QSER1Q2KHR3 1735 aa18.37■□□□□ 0.53
CCDC88C-202ENST00000334448 TM4SF1P30408 202 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 BAG6P46379 1132 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 CCDC152Q4G0S7 254 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 TTC41PQ6P2S7 1318 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 TPTE2Q6XPS3 522 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 GREM2Q9H772 168 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 IL1RAPL2Q9NP60 686 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 CHMP3Q9Y3E7 222 aa18.36■□□□□ 0.53
CCDC88C-202ENST00000334448 TUBGCP6Q96RT7 1819 aa18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 ANKRD18BA2A2Z9 1011 aa18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 HCLS1P14317 486 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 GSPT1P15170 499 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 ITGA6P23229 1130 aa18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 ERFEQ4G0M1 354 aa18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 NBPF5PQ86XG9 351 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 SIL1Q9H173 461 aa18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 TFCP2L1Q9NZI6 479 aa18.35■□□□□ 0.53
CCDC88C-202ENST00000334448 PNPLA7Q6ZV29 1317 aa18.34■□□□□ 0.53
CCDC88C-202ENST00000334448 NUTM1Q86Y26 1132 aa18.34■□□□□ 0.53
CCDC88C-202ENST00000334448 EN1Q05925 392 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-202ENST00000334448 SF3B2Q13435 895 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-202ENST00000334448 EZH2Q15910 746 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-202ENST00000334448 COL23A1Q86Y22 540 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-202ENST00000334448 EAF2Q96CJ1 260 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-202ENST00000334448 TFCP2Q12800 502 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 SLC15A2Q16348 729 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 TNNI3KQ59H18 835 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 BICDL1Q6ZP65 573 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 NLGN1Q8N2Q7 840 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 PI4K2BQ8TCG2 481 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 GPATCH3Q96I76 525 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 ANO8Q9HCE9 1232 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 RIPOR2Q9Y4F9 1068 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 FPGT-TNNI3KV9GXZ4 949 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 ZNF609O15014 1411 aa18.32■□□□□ 0.52
CCDC88C-202ENST00000334448 FAM177BA6PVY3 158 aa18.31■□□□□ 0.52
CCDC88C-202ENST00000334448 LRRC24Q50LG9 513 aa18.31■□□□□ 0.52
CCDC88C-202ENST00000334448 AACSQ86V21 672 aa18.31■□□□□ 0.52
CCDC88C-202ENST00000334448 ZNF594Q96JF6 807 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-202ENST00000334448 ECHDC1Q9NTX5 307 aa18.31■□□□□ 0.52
CCDC88C-202ENST00000334448 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-202ENST00000334448 NRXN2Q9P2S2 1712 aa18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 POLRMTO00411 1230 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 GLRX3O76003 335 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 IFIT2P09913 472 aaKnown RBP18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 TAF7LQ5H9L4 462 aa18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 CNBD1Q8NA66 436 aa18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 STK32BQ9NY57 414 aa18.3■□□□□ 0.52
CCDC88C-202ENST00000334448 ERC2O15083 957 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 GTF2E1P29083 439 aaPredicted RBP18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 DDR1Q08345 913 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 PRR5LQ6MZQ0 368 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 C3orf67Q6ZVT6 689 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 VGLL2Q8N8G2 317 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 NLRP3Q96P20 1036 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 CDC5LQ99459 802 aaKnown RBP18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 PUS3Q9BZE2 481 aaKnown RBP18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 CEP126Q9P2H0 1117 aa18.29■□□□□ 0.52
CCDC88C-202ENST00000334448 MROH5Q6ZUA9 1318 aa18.28■□□□□ 0.52
CCDC88C-202ENST00000334448 LDHAL6AQ6ZMR3 332 aa18.28■□□□□ 0.52
CCDC88C-202ENST00000334448 CCDC85AQ96PX6 553 aaPredicted RBP18.28■□□□□ 0.52
CCDC88C-202ENST00000334448 DBNLQ9UJU6 430 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-202ENST00000334448 AKAP2Q9Y2D5 859 aa18.28■□□□□ 0.52
CCDC88C-202ENST00000334448 KLRG2A4D1S0 409 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 EIF5BO60841 1220 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 CDC45O75419 566 aa18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 SERPINB2P05120 415 aa18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 SDSP20132 328 aa18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 CRY2Q49AN0 593 aa18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 TNRC6CQ9HCJ0 1690 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-202ENST00000334448 IGHMBP2P38935 993 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-202ENST00000334448 SEC31BQ9NQW1 1179 aa18.26■□□□□ 0.51
CCDC88C-202ENST00000334448 ATP5JP18859 108 aa18.25■□□□□ 0.51
CCDC88C-202ENST00000334448 ST5P78524 1137 aa18.25■□□□□ 0.51
CCDC88C-202ENST00000334448 DEFB132Q7Z7B7 95 aa18.25■□□□□ 0.51
CCDC88C-202ENST00000334448 CNNM1Q9NRU3 951 aa18.25■□□□□ 0.51
CCDC88C-202ENST00000334448 TLR7Q9NYK1 1049 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-202ENST00000334448 PDE8BO95263 885 aa18.24■□□□□ 0.51
CCDC88C-202ENST00000334448 METTL24Q5JXM2 366 aa18.24■□□□□ 0.51
CCDC88C-202ENST00000334448 TSHZ3Q63HK5 1081 aa18.24■□□□□ 0.51
CCDC88C-202ENST00000334448 TICAM2Q86XR7 235 aa18.24■□□□□ 0.51
CCDC88C-202ENST00000334448 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms