RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 IGHA1P01876 353 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 FAM98CQ17RN3 349 aaKnown RBP2.43□□□□□ -2.02
LINC00643-201ENST00000334389 DALRD3Q5D0E6 543 aaKnown RBP2.43□□□□□ -2.02
LINC00643-201ENST00000334389 ERO1AQ96HE7 468 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 CRAMP1Q96RY5 1269 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 IER2Q9BTL4 223 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 PLXND1Q9Y4D7 1925 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 TNFRSF10AO00220 468 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 POLRMTO00411 1230 aaKnown RBP2.43□□□□□ -2.02
LINC00643-201ENST00000334389 PDE6BP35913 854 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 SREBF2Q12772 1141 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 SLC10A5Q5PT55 438 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 RASIP1Q5U651 963 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 GPR161Q8N6U8 529 aaKnown RBP2.43□□□□□ -2.02
LINC00643-201ENST00000334389 PMFBP1Q8TBY8 1022 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 PXYLP1Q8TE99 480 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 GTF3C2Q8WUA4 911 aaPredicted RBP2.43□□□□□ -2.02
LINC00643-201ENST00000334389 CNKSR1Q969H4 720 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 ZNF333Q96JL9 665 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 PRKAG3Q9UGI9 489 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 CHGAP10645 457 aaKnown RBP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 VEGFBP49765 207 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 FAM161AQ3B820 660 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 FAM122AQ96E09 287 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 MYO3BQ8WXR4 1341 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 FAM221BA6H8Z2 402 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 ZNF316A6NFI3 1004 aaPredicted RBP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 HTATSF1O43719 755 aaKnown RBP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 DEFB115Q30KQ5 88 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 PSMG3-AS1Q96PY0 264 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 CDK5RAP2Q96SN8 1893 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 GDF15Q99988 308 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 HTATIP2Q9BUP3 242 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 TMEM106CQ9BVX2 250 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 CXXC1Q9P0U4 656 aaPredicted RBP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 GBF1Q92538 1859 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 MINK1Q8N4C8 1332 aaPredicted RBP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 HRO43593 1189 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 GPR162Q16538 588 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 DDX21Q9NR30 783 aaKnown RBP eCLIP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 ADARB2Q9NS39 739 aaKnown RBP2.42□□□□□ -2.02
LINC00643-201ENST00000334389 HACL1Q9UJ83 578 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 HPS5Q9UPZ3 1129 aa2.42□□□□□ -2.02
LINC00643-201ENST00000334389 ESCO1Q5FWF5 840 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 NYAP1Q6ZVC0 841 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 NARFQ9UHQ1 456 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 SHC2P98077 582 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 RSPH1Q8WYR4 309 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 KRTAP4-7Q9BYR0 210 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 PRDM11Q9NQV5 511 aa2.41□□□□□ -2.02
LINC00643-201ENST00000334389 GAKO14976 1311 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 LOC102724159A0A0B4J2E5 919 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 CAPN8A6NHC0 703 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 MANSC4A6NHS7 340 aaPredicted RBP2.4□□□□□ -2.02
LINC00643-201ENST00000334389 PWP2Q15269 919 aaKnown RBP2.4□□□□□ -2.02
LINC00643-201ENST00000334389 AMOTQ4VCS5 1084 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 NOL9Q5SY16 702 aaKnown RBP2.4□□□□□ -2.02
LINC00643-201ENST00000334389 LDLRAD1Q5T700 205 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 FKBP1CQ5VVH2 108 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 DPY19L2Q6NUT2 758 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 PDCD7Q8N8D1 485 aaKnown RBP2.4□□□□□ -2.02
LINC00643-201ENST00000334389 NLGN2Q8NFZ4 835 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 NUDT16Q96DE0 195 aaKnown RBP2.4□□□□□ -2.02
LINC00643-201ENST00000334389 SLC4A5Q9BY07 1137 aa2.4□□□□□ -2.02
LINC00643-201ENST00000334389 EVC2Q86UK5 1308 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 ADGRF5Q8IZF2 1346 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 ERVV-1B6SEH8 477 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 NTRK1P04629 796 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 TJAP1Q5JTD0 557 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 C9orf131Q5VYM1 1079 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 MCTP2Q6DN12 878 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 PODXL2Q9NZ53 605 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 PTPRSQ13332 1948 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 PDS5AQ29RF7 1337 aaKnown RBP2.4□□□□□ -2.03
LINC00643-201ENST00000334389 E9PAM4 449 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 NFKBIEO00221 500 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 GYS1P13807 737 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 LARP1Q6PKG0 1096 aaKnown RBP2.4□□□□□ -2.03
LINC00643-201ENST00000334389 SAPCD2Q86UD0 394 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 PI4K2AQ9BTU6 479 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 TIMELESSQ9UNS1 1208 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 COG5Q9UP83 839 aa2.4□□□□□ -2.03
LINC00643-201ENST00000334389 SIPA1L1O43166 1804 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 ANK1P16157 1881 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 GFRA3O60609 400 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 COL26A1Q96A83 441 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 PTPN22Q9Y2R2 807 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 V9GY48 417 aaPredicted RBP2.39□□□□□ -2.03
LINC00643-201ENST00000334389 ZMYM6O95789 1325 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 DLL1O00548 723 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 DGAT1O75907 488 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 NPR1P16066 1061 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 MAGEA9P43362 315 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 CCDC93Q567U6 631 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 XKR5Q6UX68 686 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 RASAL3Q86YV0 1011 aa2.39□□□□□ -2.03
LINC00643-201ENST00000334389 NLRC5Q86WI3 1866 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 MAP3K10Q02779 954 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 KCNMA1Q12791 1236 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 AGBL3Q8NEM8 1001 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms