RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NBPF11Q86T75 865 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 EID1Q9Y6B2 187 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 TMEM2Q9UHN6 1383 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 SLC27A2O14975 620 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 ANXA1P04083 346 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 EIF2S2P20042 333 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 SLFNL1Q499Z3 407 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 BRF1Q92994 677 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 AMOTL2Q9Y2J4 779 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 ADCY9O60503 1353 aa15.78■□□□□ 0.12
CCDC88C-201ENST00000331194 TTC21BQ7Z4L5 1316 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 POLA2Q14181 598 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 PTPN21Q16825 1174 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 SARM1Q6SZW1 724 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 TEX2Q8IWB9 1127 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 CHMP4CQ96CF2 233 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 PPP1R13BQ96KQ4 1090 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 TM6SF1Q9BZW5 370 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 TMX1Q9H3N1 280 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 ROBO2Q9HCK4 1378 aa15.77■□□□□ 0.12
CCDC88C-201ENST00000331194 PDCP20941 246 aa15.77■□□□□ 0.11
CCDC88C-201ENST00000331194 NMIQ13287 307 aaPredicted RBP15.77■□□□□ 0.11
CCDC88C-201ENST00000331194 CCAR1Q8IX12 1150 aaKnown RBP15.77■□□□□ 0.11
CCDC88C-201ENST00000331194 FMNL2Q96PY5 1086 aa15.77■□□□□ 0.11
CCDC88C-201ENST00000331194 RGS22Q8NE09 1264 aa15.77■□□□□ 0.11
CCDC88C-201ENST00000331194 LRRC2Q9BYS8 371 aa15.77■□□□□ 0.11
CCDC88C-201ENST00000331194 RIMS1Q86UR5 1692 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 GLRX3O76003 335 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 BLOC1S2Q6QNY1 142 aa15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 RUFY2Q8WXA3 655 aa15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 SMARCE1Q969G3 411 aa15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 LCMT1Q9UIC8 334 aa15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 TRIM66O15016 1216 aa15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 ARMCX5Q6P1M9 558 aa15.76■□□□□ 0.11
CCDC88C-201ENST00000331194 NEMFO60524 1076 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 KRBA2Q6ZNG9 492 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 RESTQ13127 1097 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 TAF7Q15545 349 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 STX1AQ16623 288 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 CCDC93Q567U6 631 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 CCDC34Q96HJ3 373 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 L2HGDHQ9H9P8 463 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 DNAI1Q9UI46 699 aa15.75■□□□□ 0.11
CCDC88C-201ENST00000331194 A0A0D9SFI3 127 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 H3BQV1 296 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 FANCGO15287 622 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 IFFO2Q5TF58 517 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 TMC6Q7Z403 805 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 HOMER1Q86YM7 354 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 CCDC61Q9Y6R9 512 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 CHGBP05060 677 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 DHX37Q8IY37 1157 aaKnown RBP15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 FAM177A1Q8N128 213 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 MAP4K1Q92918 833 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 KCNB2Q92953 911 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 PRR36Q9H6K5 1346 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 SPATA31D1Q6ZQQ2 1576 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 SASH3O75995 380 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 SMC2O95347 1197 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 SLC20A2Q08357 652 aa15.74■□□□□ 0.11
CCDC88C-201ENST00000331194 HDGFP51858 240 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 GUCY1B3Q02153 619 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 GOLGA8FQ08AF8 430 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 GOLGA8DPQ0D2H9 430 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 XPO4Q9C0E2 1151 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 CCDC8Q9H0W5 538 aaPredicted RBP15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 ZRANB2O95218 330 aaKnown RBP eCLIP15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 RPS6KB1P23443 525 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 C14orf37Q86TY3 774 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 EDC3Q96F86 508 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 ECHDC1Q9NTX5 307 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 IFNKQ9P0W0 207 aa15.73■□□□□ 0.11
CCDC88C-201ENST00000331194 HTATSF1O43719 755 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 KCNA6P17658 529 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 HDGFL1Q5TGJ6 251 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 TMCO3Q6UWJ1 677 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 ZNF589Q86UQ0 364 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 C10orf67Q8IYJ2 551 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 CLASRPQ8N2M8 674 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 BIN1O00499 593 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 ISM2Q6H9L7 571 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 UBXN4Q92575 508 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 BOLA2Q9H3K6 86 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 ORC3Q9UBD5 711 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 AACSQ86V21 672 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 CARD6Q9BX69 1037 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 SIL1Q9H173 461 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 RSPH14Q9UHP6 348 aa15.72■□□□□ 0.11
CCDC88C-201ENST00000331194 PI4KAP2A4QPH2 592 aa15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 URI1O94763 535 aaPredicted RBP15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 ADD1P35611 737 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 PI4KAP1Q8N8J0 262 aa15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 DNAJC5Q9H3Z4 198 aa15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 TLR7Q9NYK1 1049 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 XRN1Q8IZH2 1706 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 HSP90B1P14625 803 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 USP28Q96RU2 1077 aa15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 SEC62Q99442 399 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-201ENST00000331194 NDUFB9Q9Y6M9 179 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms