RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 A0A0D9SFI3 127 aa19.22■□□□□ 0.67
USHBP1-202ENST00000324554 A0A0G2JS52 829 aa19.22■□□□□ 0.67
USHBP1-202ENST00000324554 ERVV-2B6SEH9 535 aa19.22■□□□□ 0.67
USHBP1-202ENST00000324554 NKX1-1Q15270 411 aaPredicted RBP19.22■□□□□ 0.67
USHBP1-202ENST00000324554 TPRNQ4KMQ1 711 aa19.22■□□□□ 0.67
USHBP1-202ENST00000324554 F13A1P00488 732 aa19.22■□□□□ 0.67
USHBP1-202ENST00000324554 JARID2Q92833 1246 aaPredicted RBP19.22■□□□□ 0.67
USHBP1-202ENST00000324554 SYTL4Q96C24 671 aaPredicted RBP19.22■□□□□ 0.67
USHBP1-202ENST00000324554 ZSCAN31Q96LW9 406 aaPredicted RBP19.22■□□□□ 0.67
USHBP1-202ENST00000324554 FSD1Q9BTV5 496 aa19.22■□□□□ 0.67
USHBP1-202ENST00000324554 SH2B1Q9NRF2 756 aaPredicted RBP19.22■□□□□ 0.67
USHBP1-202ENST00000324554 CCDC9Q9Y3X0 531 aaKnown RBP19.22■□□□□ 0.67
USHBP1-202ENST00000324554 PHF14O94880 888 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 ASAP1Q9ULH1 1129 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 SHANK3Q9BYB0 1731 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 PLEKHG2Q9H7P9 1386 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 A1BGP04217 495 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 GJB2P29033 226 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 KCNJ4P48050 445 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 ST3GAL1Q11201 340 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 COPRSQ9NQ92 184 aa19.21■□□□□ 0.67
USHBP1-202ENST00000324554 R3HCC1Q9Y3T6 440 aaKnown RBP19.21■□□□□ 0.67
USHBP1-202ENST00000324554 MED23Q9ULK4 1368 aa19.2■□□□□ 0.66
USHBP1-202ENST00000324554 TMOD3Q9NYL9 352 aa19.2■□□□□ 0.66
USHBP1-202ENST00000324554 SLC27A2O14975 620 aa19.2■□□□□ 0.66
USHBP1-202ENST00000324554 MCM5P33992 734 aa19.2■□□□□ 0.66
USHBP1-202ENST00000324554 RFX5P48382 616 aaPredicted RBP19.2■□□□□ 0.66
USHBP1-202ENST00000324554 ME3Q16798 604 aa19.2■□□□□ 0.66
USHBP1-202ENST00000324554 PIGBQ92521 554 aa19.2■□□□□ 0.66
USHBP1-202ENST00000324554 COL14A1Q05707 1796 aaKnown RBP19.19■□□□□ 0.66
USHBP1-202ENST00000324554 PTPN12Q05209 780 aaKnown RBP19.19■□□□□ 0.66
USHBP1-202ENST00000324554 CCDC183Q5T5S1 534 aa19.19■□□□□ 0.66
USHBP1-202ENST00000324554 ZNF330Q9Y3S2 320 aaPredicted RBP19.19■□□□□ 0.66
USHBP1-202ENST00000324554 NBPF26B4DH59 902 aa19.18■□□□□ 0.66
USHBP1-202ENST00000324554 EXOC5O00471 708 aa19.18■□□□□ 0.66
USHBP1-202ENST00000324554 COL9A3Q14050 684 aaPredicted RBP19.18■□□□□ 0.66
USHBP1-202ENST00000324554 NBPF14Q5TI25 921 aa19.18■□□□□ 0.66
USHBP1-202ENST00000324554 NBPF10Q6P3W6 841 aaKnown RBP19.18■□□□□ 0.66
USHBP1-202ENST00000324554 NBPF15Q8N660 670 aa19.18■□□□□ 0.66
USHBP1-202ENST00000324554 MTMR6Q9Y217 621 aa19.18■□□□□ 0.66
USHBP1-202ENST00000324554 ATP6V1DQ9Y5K8 247 aa19.18■□□□□ 0.66
USHBP1-202ENST00000324554 FIBPO43427 364 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 TERF1P54274 439 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 UBE2HP62256 183 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 RABL6Q3YEC7 729 aaPredicted RBP19.17■□□□□ 0.66
USHBP1-202ENST00000324554 UBE3BQ7Z3V4 1068 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 DBNLQ9UJU6 430 aaKnown RBP19.17■□□□□ 0.66
USHBP1-202ENST00000324554 TPCN1Q9ULQ1 816 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 JCADQ9P266 1359 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 ARFGEF2Q9Y6D5 1785 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 AFDNP55196 1824 aaKnown RBP19.17■□□□□ 0.66
USHBP1-202ENST00000324554 GLI3P10071 1580 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 COL15A1P39059 1388 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 ATP5J2-PTCD1G3V325 749 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 PSMA5P28066 241 aa19.17■□□□□ 0.66
USHBP1-202ENST00000324554 ZNF589Q86UQ0 364 aaPredicted RBP19.17■□□□□ 0.66
USHBP1-202ENST00000324554 TNNI3KQ59H18 835 aa19.16■□□□□ 0.66
USHBP1-202ENST00000324554 NECAB1Q8N987 351 aa19.16■□□□□ 0.66
USHBP1-202ENST00000324554 EDC3Q96F86 508 aaKnown RBP19.16■□□□□ 0.66
USHBP1-202ENST00000324554 FPGT-TNNI3KV9GXZ4 949 aa19.16■□□□□ 0.66
USHBP1-202ENST00000324554 COL22A1Q8NFW1 1626 aaPredicted RBP19.16■□□□□ 0.66
USHBP1-202ENST00000324554 TFCP2Q12800 502 aa19.16■□□□□ 0.66
USHBP1-202ENST00000324554 RNF20Q5VTR2 975 aa19.16■□□□□ 0.66
USHBP1-202ENST00000324554 TAF6LQ9Y6J9 622 aa19.16■□□□□ 0.66
USHBP1-202ENST00000324554 ATP5JP18859 108 aa19.15■□□□□ 0.66
USHBP1-202ENST00000324554 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.15■□□□□ 0.66
USHBP1-202ENST00000324554 PTMAP06454 111 aaKnown RBP19.15■□□□□ 0.66
USHBP1-202ENST00000324554 DNM1Q05193 864 aaKnown RBP19.15■□□□□ 0.66
USHBP1-202ENST00000324554 FAM184AQ8NB25 1140 aa19.15■□□□□ 0.66
USHBP1-202ENST00000324554 C8orf37Q96NL8 207 aa19.15■□□□□ 0.66
USHBP1-202ENST00000324554 USP25Q9UHP3 1055 aa19.15■□□□□ 0.66
USHBP1-202ENST00000324554 TOGARAM1Q9Y4F4 1720 aa19.15■□□□□ 0.66
USHBP1-202ENST00000324554 A0A087WZG4 1122 aa19.14■□□□□ 0.66
USHBP1-202ENST00000324554 HCLS1P14317 486 aaPredicted RBP19.14■□□□□ 0.66
USHBP1-202ENST00000324554 TTLL7Q6ZT98 887 aa19.14■□□□□ 0.66
USHBP1-202ENST00000324554 MPNDQ8N594 471 aa19.14■□□□□ 0.66
USHBP1-202ENST00000324554 CASP7P55210 303 aa19.14■□□□□ 0.65
USHBP1-202ENST00000324554 BLOC1S2Q6QNY1 142 aa19.14■□□□□ 0.65
USHBP1-202ENST00000324554 ACSBG1Q96GR2 724 aa19.14■□□□□ 0.65
USHBP1-202ENST00000324554 LAMB4A4D0S4 1761 aa19.14■□□□□ 0.65
USHBP1-202ENST00000324554 TAF5LO75529 589 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 RPS6KB1P23443 525 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 UVSSAQ2YD98 709 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 PLBD2Q8NHP8 589 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 ATG3Q9NT62 314 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 DISP2A7MBM2 1401 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 SPATA31A1Q5TZJ5 1347 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 TCEANC2Q96MN5 208 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 HMG20BQ9P0W2 317 aa19.13■□□□□ 0.65
USHBP1-202ENST00000324554 VPS37CA5D8V6 355 aaPredicted RBP19.12■□□□□ 0.65
USHBP1-202ENST00000324554 CSPP1Q1MSJ5 1256 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 TSGA10IPQ3SY00 556 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 DNAJC10Q8IXB1 793 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 ALDH8A1Q9H2A2 487 aaPredicted RBP19.12■□□□□ 0.65
USHBP1-202ENST00000324554 KCPQ6ZWJ8 1503 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 ANKRD1Q15327 319 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 ZBTB3Q9H5J0 574 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 NDUFB9Q9Y6M9 179 aa19.12■□□□□ 0.65
USHBP1-202ENST00000324554 PLCH1Q4KWH8 1693 aa19.11■□□□□ 0.65
USHBP1-202ENST00000324554 LETM1O95202 739 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms