RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 GAPVD1Q14C86 1478 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 C6orf229H3BNL8 230 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 KIF5BP33176 963 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 TPD52P55327 224 aaPredicted RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 ORC3Q9UBD5 711 aaPredicted RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 PABPN1LA6NDY0 278 aaKnown RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 PSMC4P43686 418 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 AKNAD1Q5T1N1 836 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 SLC26A6Q9BXS9 759 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 CFTRP13569 1480 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 HPDP32754 393 aaPredicted RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 NBPF11Q86T75 865 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 SEC62Q99442 399 aaKnown RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 GOLIM4O00461 696 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 TMPOP42166 694 aaKnown RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 SYKP43405 635 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 LACTBP83111 547 aaPredicted RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 TYRO3Q06418 890 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 DIXDC1Q155Q3 683 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 ZNF569Q5MCW4 686 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 KIF20AO95235 890 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 TMEM67Q5HYA8 995 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 CPLX4Q7Z7G2 160 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 SSH1Q8WYL5 1049 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 KIF1BPQ96EK5 621 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 MICAL3Q7RTP6 2002 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 NCOA2Q15596 1464 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 TSNARE1Q96NA8 513 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 A0A087WZG4 1122 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 OPA1O60313 960 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 CLCN1P35523 988 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 TCEANC2Q96MN5 208 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.01□□□□□ -0.97
CIITA-201ENST00000324288 PHAXQ9H814 394 aaKnown RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 TRMT112Q9UI30 125 aaKnown RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 FRMD3A2A2Y4 597 aa9□□□□□ -0.97
CIITA-201ENST00000324288 RSRC1Q96IZ7 334 aaKnown RBP9□□□□□ -0.97
CIITA-201ENST00000324288 A0A1B0GUL7 405 aa9□□□□□ -0.97
CIITA-201ENST00000324288 RFC1P35251 1148 aaPredicted RBP9□□□□□ -0.97
CIITA-201ENST00000324288 MRVI1Q9Y6F6 885 aa9□□□□□ -0.97
CIITA-201ENST00000324288 ANKRD12Q6UB98 2062 aa9□□□□□ -0.97
CIITA-201ENST00000324288 MAP3K12Q12852 859 aa9□□□□□ -0.97
CIITA-201ENST00000324288 EEF2P13639 858 aaKnown RBP9□□□□□ -0.97
CIITA-201ENST00000324288 RRAGBQ5VZM2 374 aa9□□□□□ -0.97
CIITA-201ENST00000324288 LRSAM1Q6UWE0 723 aa9□□□□□ -0.97
CIITA-201ENST00000324288 CCDC63Q8NA47 563 aa9□□□□□ -0.97
CIITA-201ENST00000324288 SCAPERQ9BY12 1400 aa9□□□□□ -0.97
CIITA-201ENST00000324288 CIB2O75838 187 aa9□□□□□ -0.97
CIITA-201ENST00000324288 SYT1P21579 422 aa9□□□□□ -0.97
CIITA-201ENST00000324288 NFE2L2Q16236 605 aa9□□□□□ -0.97
CIITA-201ENST00000324288 LONRF3Q496Y0 759 aa9□□□□□ -0.97
CIITA-201ENST00000324288 NBPF8Q3BBV2 869 aa9□□□□□ -0.97
CIITA-201ENST00000324288 ZNF287Q9HBT7 754 aa9□□□□□ -0.97
CIITA-201ENST00000324288 MARCKSP29966 332 aaPredicted RBP9□□□□□ -0.97
CIITA-201ENST00000324288 TAF7Q15545 349 aaPredicted RBP9□□□□□ -0.97
CIITA-201ENST00000324288 CALML4Q96GE6 196 aa9□□□□□ -0.97
CIITA-201ENST00000324288 ZNF213O14771 459 aa9□□□□□ -0.97
CIITA-201ENST00000324288 ERCC3P19447 782 aa9□□□□□ -0.97
CIITA-201ENST00000324288 GPIHBP1Q8IV16 184 aa9□□□□□ -0.97
CIITA-201ENST00000324288 ZBTB3Q9H5J0 574 aa9□□□□□ -0.97
CIITA-201ENST00000324288 CTAGE9A4FU28 777 aa9□□□□□ -0.97
CIITA-201ENST00000324288 F8W031 263 aaPredicted RBP9□□□□□ -0.97
CIITA-201ENST00000324288 SLU7O95391 586 aaKnown RBP9□□□□□ -0.97
CIITA-201ENST00000324288 RAB34Q9BZG1 259 aa9□□□□□ -0.97
CIITA-201ENST00000324288 FEZ2Q9UHY8 353 aaPredicted RBP9□□□□□ -0.97
CIITA-201ENST00000324288 CADPSQ9ULU8 1353 aa9□□□□□ -0.97
CIITA-201ENST00000324288 ATP5J2-PTCD1G3V325 749 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 IQSEC3Q9UPP2 1182 aaPredicted RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 SLFN5Q08AF3 891 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 DDX19AQ9NUU7 478 aaKnown RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 OGFRQ9NZT2 677 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 ZNF652Q9Y2D9 606 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 PDIA4P13667 645 aaKnown RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 LMOD1P29536 600 aaPredicted RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 UBE2HP62256 183 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 KAT6AQ92794 2004 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 BUB1BO60566 1050 aaPredicted RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 IQCA1Q86XH1 822 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 AKAP2Q9Y2D5 859 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 GLRX3O76003 335 aaKnown RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 PPP2R3AQ06190 1150 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 RAB3IL1Q8TBN0 382 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 C9orf84Q5VXU9 1444 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 FGD5Q6ZNL6 1462 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 CETN1Q12798 172 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 TRIM47Q96LD4 638 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 EXOC1Q9NV70 894 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 SSX2IPQ9Y2D8 614 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 TBCAO75347 108 aaKnown RBP8.99□□□□□ -0.97
CIITA-201ENST00000324288 ZWINTO95229 277 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 KRT13P13646 458 aa8.99□□□□□ -0.97
CIITA-201ENST00000324288 HDXQ7Z353 690 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 FAM76AQ8TAV0 307 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 LRRC9Q6ZRR7 1453 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 SMARCA4P51532 1647 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 GOLGA6L9A6NEM1 432 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 CFAP58Q5T655 872 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 IFNKQ9P0W0 207 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 PLS1Q14651 629 aa8.98□□□□□ -0.97
CIITA-201ENST00000324288 TACO1Q9BSH4 297 aaKnown RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms