RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 IGKV5-2P06315 115 aa20.92■□□□□ 0.94
LSM1-201ENST00000311351 VEGFAP15692 232 aaPredicted RBP20.92■□□□□ 0.94
LSM1-201ENST00000311351 FLIIQ13045 1269 aa20.92■□□□□ 0.94
LSM1-201ENST00000311351 MYH16Q9H6N6 1097 aa20.92■□□□□ 0.94
LSM1-201ENST00000311351 DUOX1Q9NRD9 1551 aa20.92■□□□□ 0.94
LSM1-201ENST00000311351 MYH3P11055 1940 aa20.91■□□□□ 0.94
LSM1-201ENST00000311351 SF3B3Q15393 1217 aaKnown RBP20.91■□□□□ 0.94
LSM1-201ENST00000311351 PCCAP05165 728 aaPredicted RBP20.9■□□□□ 0.94
LSM1-201ENST00000311351 CELF1Q92879 486 aaKnown RBP20.9■□□□□ 0.94
LSM1-201ENST00000311351 SCN4AP35499 1836 aa20.9■□□□□ 0.94
LSM1-201ENST00000311351 BBOX1O75936 387 aa20.89■□□□□ 0.93
LSM1-201ENST00000311351 FKBP5Q13451 457 aaPredicted RBP20.89■□□□□ 0.93
LSM1-201ENST00000311351 CWF19L2Q2TBE0 894 aaKnown RBP20.89■□□□□ 0.93
LSM1-201ENST00000311351 GRIPAP1Q4V328 841 aa20.89■□□□□ 0.93
LSM1-201ENST00000311351 LARGE2Q8N3Y3 721 aa20.89■□□□□ 0.93
LSM1-201ENST00000311351 TMX4Q9H1E5 349 aaPredicted RBP20.89■□□□□ 0.93
LSM1-201ENST00000311351 LTBP1Q14766 1721 aa20.88■□□□□ 0.93
LSM1-201ENST00000311351 NEXNQ0ZGT2 675 aa20.88■□□□□ 0.93
LSM1-201ENST00000311351 SP8Q8IXZ3 490 aa20.88■□□□□ 0.93
LSM1-201ENST00000311351 SPEF2Q9C093 1822 aa20.88■□□□□ 0.93
LSM1-201ENST00000311351 NEURL1BA8MQ27 555 aa20.87■□□□□ 0.93
LSM1-201ENST00000311351 FZD9O00144 591 aa20.87■□□□□ 0.93
LSM1-201ENST00000311351 PPIP5K2O43314 1243 aa20.87■□□□□ 0.93
LSM1-201ENST00000311351 AOC3Q16853 763 aa20.87■□□□□ 0.93
LSM1-201ENST00000311351 DPP8Q6V1X1 898 aaPredicted RBP20.87■□□□□ 0.93
LSM1-201ENST00000311351 JDP2Q8WYK2 163 aa20.87■□□□□ 0.93
LSM1-201ENST00000311351 CCDC85AQ96PX6 553 aaPredicted RBP20.87■□□□□ 0.93
LSM1-201ENST00000311351 CCER2I3L3R5 266 aa20.86■□□□□ 0.93
LSM1-201ENST00000311351 MPNDQ8N594 471 aa20.86■□□□□ 0.93
LSM1-201ENST00000311351 L3MBTL3Q96JM7 780 aaPredicted RBP20.86■□□□□ 0.93
LSM1-201ENST00000311351 SEC31BQ9NQW1 1179 aa20.86■□□□□ 0.93
LSM1-201ENST00000311351 CDHR2Q9BYE9 1310 aa20.85■□□□□ 0.93
LSM1-201ENST00000311351 PDE8AO60658 829 aa20.85■□□□□ 0.93
LSM1-201ENST00000311351 FSTL1Q12841 308 aa20.85■□□□□ 0.93
LSM1-201ENST00000311351 SMC1BQ8NDV3 1235 aa20.85■□□□□ 0.93
LSM1-201ENST00000311351 DNAAF4Q8WXU2 420 aa20.85■□□□□ 0.93
LSM1-201ENST00000311351 RTFDC1Q9BY42 306 aaPredicted RBP20.85■□□□□ 0.93
LSM1-201ENST00000311351 POTEIP0CG38 1075 aa20.84■□□□□ 0.93
LSM1-201ENST00000311351 POTEJP0CG39 1038 aa20.84■□□□□ 0.93
LSM1-201ENST00000311351 TMC4Q7Z404 712 aa20.84■□□□□ 0.93
LSM1-201ENST00000311351 NIM1KQ8IY84 436 aa20.84■□□□□ 0.93
LSM1-201ENST00000311351 F6X3S4 739 aa20.83■□□□□ 0.93
LSM1-201ENST00000311351 HSP90B1P14625 803 aaKnown RBP20.83■□□□□ 0.93
LSM1-201ENST00000311351 CCDC152Q4G0S7 254 aa20.83■□□□□ 0.93
LSM1-201ENST00000311351 UBE3BQ7Z3V4 1068 aa20.83■□□□□ 0.93
LSM1-201ENST00000311351 SUPT20HQ8NEM7 779 aa20.83■□□□□ 0.93
LSM1-201ENST00000311351 CTSWP56202 376 aa20.82■□□□□ 0.92
LSM1-201ENST00000311351 EIF6P56537 245 aaKnown RBP20.82■□□□□ 0.92
LSM1-201ENST00000311351 GPC2Q8N158 579 aa20.82■□□□□ 0.92
LSM1-201ENST00000311351 GJA3Q9Y6H8 435 aa20.82■□□□□ 0.92
LSM1-201ENST00000311351 IQCA1LA6NCM1 817 aa20.81■□□□□ 0.92
LSM1-201ENST00000311351 RPS8P62241 208 aaKnown RBP20.81■□□□□ 0.92
LSM1-201ENST00000311351 GPSM2P81274 684 aa20.81■□□□□ 0.92
LSM1-201ENST00000311351 GCKRQ14397 625 aa20.81■□□□□ 0.92
LSM1-201ENST00000311351 TAF1DQ9H5J8 278 aaPredicted RBP20.81■□□□□ 0.92
LSM1-201ENST00000311351 ADAMTSL1Q8N6G6 1762 aa20.81■□□□□ 0.92
LSM1-201ENST00000311351 E9PSI1 815 aa20.8■□□□□ 0.92
LSM1-201ENST00000311351 APLP1P51693 650 aa20.8■□□□□ 0.92
LSM1-201ENST00000311351 HTRA3P83110 453 aa20.8■□□□□ 0.92
LSM1-201ENST00000311351 KIAA2012Q0VF49 1180 aa20.8■□□□□ 0.92
LSM1-201ENST00000311351 LINS1Q8NG48 757 aa20.8■□□□□ 0.92
LSM1-201ENST00000311351 NSFL1CQ9UNZ2 370 aaKnown RBP20.8■□□□□ 0.92
LSM1-201ENST00000311351 H7C1W4 665 aa20.79■□□□□ 0.92
LSM1-201ENST00000311351 SLFN5Q08AF3 891 aa20.79■□□□□ 0.92
LSM1-201ENST00000311351 CDCA7LQ96GN5 454 aa20.79■□□□□ 0.92
LSM1-201ENST00000311351 GPR101Q96P66 508 aaPredicted RBP20.79■□□□□ 0.92
LSM1-201ENST00000311351 VPS33BQ9H267 617 aa20.79■□□□□ 0.92
LSM1-201ENST00000311351 HACL1Q9UJ83 578 aa20.79■□□□□ 0.92
LSM1-201ENST00000311351 CASP7P55210 303 aa20.78■□□□□ 0.92
LSM1-201ENST00000311351 TTLL11Q8NHH1 800 aa20.78■□□□□ 0.92
LSM1-201ENST00000311351 EPHX2P34913 555 aa20.77■□□□□ 0.92
LSM1-201ENST00000311351 EAPPQ56P03 285 aaPredicted RBP20.77■□□□□ 0.92
LSM1-201ENST00000311351 BEND3Q5T5X7 828 aa20.77■□□□□ 0.92
LSM1-201ENST00000311351 GREM2Q9H772 168 aa20.77■□□□□ 0.92
LSM1-201ENST00000311351 POLLQ9UGP5 575 aa20.77■□□□□ 0.92
LSM1-201ENST00000311351 ZNRF3Q9ULT6 936 aa20.77■□□□□ 0.92
LSM1-201ENST00000311351 C6orf229H3BNL8 230 aa20.76■□□□□ 0.91
LSM1-201ENST00000311351 SCNN1DP51172 638 aa20.76■□□□□ 0.91
LSM1-201ENST00000311351 CHADLQ6NUI6 762 aa20.76■□□□□ 0.91
LSM1-201ENST00000311351 ANKRD18AQ8IVF6 992 aa20.76■□□□□ 0.91
LSM1-201ENST00000311351 RTL9Q8NET4 1388 aa20.75■□□□□ 0.91
LSM1-201ENST00000311351 YDJCA8MPS7 323 aa20.75■□□□□ 0.91
LSM1-201ENST00000311351 RIMBP2O15034 1052 aa20.75■□□□□ 0.91
LSM1-201ENST00000311351 CXCL9Q07325 125 aa20.75■□□□□ 0.91
LSM1-201ENST00000311351 WASHC4Q2M389 1173 aa20.75■□□□□ 0.91
LSM1-201ENST00000311351 DIEXFQ68CQ4 756 aaKnown RBP20.75■□□□□ 0.91
LSM1-201ENST00000311351 TBC1D16Q8TBP0 767 aa20.75■□□□□ 0.91
LSM1-201ENST00000311351 SCN9AQ15858 1988 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 RAD17O75943 681 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 UFL1O94874 794 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 LDHDQ86WU2 507 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 MIER1Q8N108 512 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 CDC5LQ99459 802 aaKnown RBP20.74■□□□□ 0.91
LSM1-201ENST00000311351 PLA2G12BQ9BX93 195 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 DBNDD1Q9H9R9 158 aa20.74■□□□□ 0.91
LSM1-201ENST00000311351 LMOD1P29536 600 aaPredicted RBP20.73■□□□□ 0.91
LSM1-201ENST00000311351 EPS15P42566 896 aa20.73■□□□□ 0.91
LSM1-201ENST00000311351 FAM161AQ3B820 660 aa20.73■□□□□ 0.91
LSM1-201ENST00000311351 SLC4A10Q6U841 1118 aa20.73■□□□□ 0.91
LSM1-201ENST00000311351 MRPL50Q8N5N7 158 aaKnown RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms