RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TCP11L1Q9NUJ3 509 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 ZNF608Q9ULD9 1512 aaPredicted RBP19.87■□□□□ 0.77
SYNPO-201ENST00000307662 PRPF4BQ13523 1007 aaKnown RBP19.87■□□□□ 0.77
SYNPO-201ENST00000307662 FBXO31Q5XUX0 539 aaPredicted RBP19.87■□□□□ 0.77
SYNPO-201ENST00000307662 RHPN1Q8TCX5 695 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 AKR1B10O60218 316 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 IFI16Q16666 785 aaKnown RBP19.86■□□□□ 0.77
SYNPO-201ENST00000307662 CALML4Q96GE6 196 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 FANCAO15360 1455 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 ANKRD44Q8N8A2 993 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 ANKRD36BQ8N2N9 1353 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 STAMBPO95630 424 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 TRIM21P19474 475 aaKnown RBP19.86■□□□□ 0.77
SYNPO-201ENST00000307662 IGSF3O75054 1194 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 VPS18Q9P253 973 aa19.86■□□□□ 0.77
SYNPO-201ENST00000307662 SPAG1Q07617 926 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 IFIT5Q13325 482 aaKnown RBP19.85■□□□□ 0.77
SYNPO-201ENST00000307662 NBPF11Q86T75 865 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 TRIM47Q96LD4 638 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 PIK3R4Q99570 1358 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 MICU3Q86XE3 530 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 CCDC144CPQ8IYA2 1237 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 PPFIA3O75145 1194 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 TTC21BQ7Z4L5 1316 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 EBAG9O00559 213 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 SLC26A6Q9BXS9 759 aa19.85■□□□□ 0.77
SYNPO-201ENST00000307662 MYO1BO43795 1136 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 CCDC96Q2M329 555 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 ATRIPQ8WXE1 791 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 NSRP1Q9H0G5 558 aaKnown RBP19.84■□□□□ 0.77
SYNPO-201ENST00000307662 IRX3P78415 501 aaPredicted RBP19.84■□□□□ 0.77
SYNPO-201ENST00000307662 CCDC155Q8N6L0 562 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 MACROD2A1Z1Q3 448 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 UBA7P41226 1012 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 CAVIN4Q5BKX8 364 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 C6orf163Q5TEZ5 329 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 RRAGBQ5VZM2 374 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 INTS4Q96HW7 963 aaKnown RBP19.84■□□□□ 0.77
SYNPO-201ENST00000307662 RBM8AQ9Y5S9 174 aaKnown RBP19.84■□□□□ 0.77
SYNPO-201ENST00000307662 FSD2A1L4K1 749 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 STARD3NLO95772 234 aa19.84■□□□□ 0.77
SYNPO-201ENST00000307662 SYT10Q6XYQ8 523 aa19.83■□□□□ 0.77
SYNPO-201ENST00000307662 MSL1Q68DK7 614 aa19.83■□□□□ 0.77
SYNPO-201ENST00000307662 ZSCAN29Q8IWY8 852 aaPredicted RBP19.83■□□□□ 0.77
SYNPO-201ENST00000307662 CEP63Q96MT8 703 aa19.83■□□□□ 0.77
SYNPO-201ENST00000307662 MAP3K2Q9Y2U5 619 aa19.83■□□□□ 0.77
SYNPO-201ENST00000307662 RTL1A6NKG5 1358 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 HAND2P61296 217 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 ZGPATQ8N5A5 531 aaKnown RBP19.83■□□□□ 0.76
SYNPO-201ENST00000307662 MEIS3Q99687 375 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 NUP160Q12769 1436 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 IDEP14735 1019 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 RBM5P52756 815 aaKnown RBP eCLIP19.83■□□□□ 0.76
SYNPO-201ENST00000307662 RASSF4Q9H2L5 321 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 AMOTL2Q9Y2J4 779 aa19.83■□□□□ 0.76
SYNPO-201ENST00000307662 SEC24BO95487 1268 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 SLC5A1P13866 664 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 RAB11FIP4Q86YS3 637 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 TNIP1Q15025 636 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 TTF1Q15361 905 aaPredicted RBP19.82■□□□□ 0.76
SYNPO-201ENST00000307662 HSP90AA4PQ58FG1 418 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 PHF8Q9UPP1 1060 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 KLF18A0A0U1RQI7 1052 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 NEBLO76041 1014 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 DENND4BO75064 1496 aaPredicted RBP19.82■□□□□ 0.76
SYNPO-201ENST00000307662 KIAA0753Q2KHM9 967 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 RBSNQ9H1K0 784 aa19.82■□□□□ 0.76
SYNPO-201ENST00000307662 CETN1Q12798 172 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 ERO1AQ96HE7 468 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 NPHP3Q7Z494 1330 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 TACC1O75410 805 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 TCERG1LQ5VWI1 586 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 CCDC121Q6ZUS5 278 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 BMP15O95972 392 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 TUBBP07437 444 aa19.81■□□□□ 0.76
SYNPO-201ENST00000307662 LMOD1P29536 600 aaPredicted RBP19.81■□□□□ 0.76
SYNPO-201ENST00000307662 C10orf67Q8IYJ2 551 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 OTUD6BQ8N6M0 293 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 ZNF444Q8N0Y2 327 aaPredicted RBP19.8■□□□□ 0.76
SYNPO-201ENST00000307662 USHBP1Q8N6Y0 703 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 RAPGEF6Q8TEU7 1601 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 TERF1P54274 439 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 MRPL50Q8N5N7 158 aaKnown RBP19.8■□□□□ 0.76
SYNPO-201ENST00000307662 FBF1Q8TES7 1133 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 TCEANC2Q96MN5 208 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 EXOC1Q9NV70 894 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 MPHOSPH10O00566 681 aaKnown RBP19.8■□□□□ 0.76
SYNPO-201ENST00000307662 ALG1Q9BT22 464 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 PARD3Q8TEW0 1356 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 FAM83GA6ND36 823 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 AFMP43652 599 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 LRRC27Q9C0I9 530 aa19.8■□□□□ 0.76
SYNPO-201ENST00000307662 KIF5BP33176 963 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 KRT83P78385 493 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 ASXL1Q8IXJ9 1541 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 KDM5BQ9UGL1 1544 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 Q6ZUG5 572 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 MFSD6Q6ZSS7 791 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 C16orf71Q8IYS4 520 aaPredicted RBP19.79■□□□□ 0.76
SYNPO-201ENST00000307662 ANKS4BQ8N8V4 417 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms