RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 TRIM21P19474 475 aaKnown RBP16■□□□□ 0.15
PRKCB-201ENST00000303531 HMGB2P26583 209 aaKnown RBP16■□□□□ 0.15
PRKCB-201ENST00000303531 RBM25P49756 843 aaKnown RBP16■□□□□ 0.15
PRKCB-201ENST00000303531 UBASH3AP57075 661 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 SMARCC1Q92922 1105 aaPredicted RBP16■□□□□ 0.15
PRKCB-201ENST00000303531 SCLT1Q96NL6 688 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 SPDYE4A6NLX3 237 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 ALG1Q9BT22 464 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 ZBTB43O43298 467 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 BAG3O95817 575 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 Q6ZUG5 572 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 LDHCP07864 332 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 KCNG4Q8TDN1 519 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 INCENPQ9NQS7 918 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 EHMT1Q9H9B1 1298 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 JADE2Q9NQC1 790 aa16■□□□□ 0.15
PRKCB-201ENST00000303531 F13A1P00488 732 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 MCMDC2Q4G0Z9 681 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 CCDC171Q6TFL3 1326 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 GTF2F1P35269 517 aaKnown RBP eCLIP15.99■□□□□ 0.152e-7■■■■■ 36
PRKCB-201ENST00000303531 CHRNA2Q15822 529 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 SPECC1Q5M775 1068 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 FAM200AQ8TCP9 573 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 TRIM47Q96LD4 638 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 GRM8O00222 908 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 ZFYP08048 801 aaPredicted RBP15.99■□□□□ 0.15
PRKCB-201ENST00000303531 PTPRKQ15262 1439 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 DNM1Q05193 864 aaKnown RBP15.99■□□□□ 0.15
PRKCB-201ENST00000303531 CETN1Q12798 172 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 CTR9Q6PD62 1173 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 DACT1Q9NYF0 836 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 COPS6Q7L5N1 327 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 GCOM1H8Y6P7 765 aaPredicted RBP15.99■□□□□ 0.15
PRKCB-201ENST00000303531 MYZAPP0CAP1 466 aa15.99■□□□□ 0.15
PRKCB-201ENST00000303531 MRPS27Q92552 414 aaKnown RBP15.99■□□□□ 0.15
PRKCB-201ENST00000303531 AFMP43652 599 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 NOP2P46087 812 aaKnown RBP15.98■□□□□ 0.15
PRKCB-201ENST00000303531 KRT23Q9C075 422 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 PPIP5K1Q6PFW1 1433 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 HSP90AA4PQ58FG1 418 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 CALCOCO1Q9P1Z2 691 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 ALDH1L1O75891 902 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 SKILP12757 684 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 CCDC186Q7Z3E2 898 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 PRAG1Q86YV5 1406 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 LIG1P18858 919 aa15.98■□□□□ 0.15
PRKCB-201ENST00000303531 PRPF4BQ13523 1007 aaKnown RBP15.98■□□□□ 0.15
PRKCB-201ENST00000303531 NOLC1Q14978 699 aaKnown RBP eCLIP15.98■□□□□ 0.153e-8■□□□□ 11.3
PRKCB-201ENST00000303531 RNF187Q5TA31 235 aaPredicted RBP15.98■□□□□ 0.15
PRKCB-201ENST00000303531 CRNKL1Q9BZJ0 848 aaKnown RBP15.98■□□□□ 0.15
PRKCB-201ENST00000303531 RRAGBQ5VZM2 374 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 TRMT1LQ7Z2T5 733 aaKnown RBP15.97■□□□□ 0.15
PRKCB-201ENST00000303531 EXOC1Q9NV70 894 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 TTC21AQ8NDW8 1320 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 RLBP1P12271 317 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 RMND1Q9NWS8 449 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 CHMP4BP1P59074 171 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 ZNF219Q9P2Y4 722 aaPredicted RBP15.97■□□□□ 0.15
PRKCB-201ENST00000303531 GOLGA6L10A0A0M3HER8 536 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 DCAF8L1A6NGE4 600 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 MYO1BO43795 1136 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 NMIQ13287 307 aaPredicted RBP15.97■□□□□ 0.15
PRKCB-201ENST00000303531 BMS1Q14692 1282 aaKnown RBP15.97■□□□□ 0.15
PRKCB-201ENST00000303531 TRERF1Q96PN7 1200 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 DNAJC25Q9H1X3 360 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 KSR2Q6VAB6 950 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 POLR3AO14802 1390 aaPredicted RBP15.97■□□□□ 0.15
PRKCB-201ENST00000303531 SLC39A6Q13433 755 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 ATP2B3Q16720 1220 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 EIF4A2Q14240 407 aaKnown RBP15.97■□□□□ 0.15
PRKCB-201ENST00000303531 STX8Q9UNK0 236 aa15.97■□□□□ 0.15
PRKCB-201ENST00000303531 LMBR1LQ6UX01 489 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 PA2G4Q9UQ80 394 aaKnown RBP15.96■□□□□ 0.15
PRKCB-201ENST00000303531 AOPEPQ8N6M6 819 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 TAOK3Q9H2K8 898 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 NUP160Q12769 1436 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 NBPF7P0C2Y1 421 aaPredicted RBP15.96■□□□□ 0.15
PRKCB-201ENST00000303531 RTN1Q16799 776 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 CCDC152Q4G0S7 254 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 MARCKSP29966 332 aaPredicted RBP15.96■□□□□ 0.15
PRKCB-201ENST00000303531 SMC1AQ14683 1233 aaKnown RBP15.96■□□□□ 0.15
PRKCB-201ENST00000303531 SLC4A4Q9Y6R1 1079 aa15.96■□□□□ 0.15
PRKCB-201ENST00000303531 IFIT1BQ5T764 474 aaKnown RBP15.96■□□□□ 0.15
PRKCB-201ENST00000303531 MICALCLQ6ZW33 695 aa15.96■□□□□ 0.14
PRKCB-201ENST00000303531 EHBP1Q8NDI1 1231 aa15.96■□□□□ 0.14
PRKCB-201ENST00000303531 CEP85Q6P2H3 762 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 CNNM2Q9H8M5 875 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 CYP7A1P22680 504 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 CLCN1P35523 988 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 PRIM1P49642 420 aaKnown RBP15.95■□□□□ 0.14
PRKCB-201ENST00000303531 MAATS1Q7Z4T9 603 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 HOOK3Q86VS8 718 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 DNAI2Q9GZS0 605 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 AKR1B10O60218 316 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 TSPYL6Q8N831 410 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 LRRC27Q9C0I9 530 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.95■□□□□ 0.143e-7■■□□□ 11.9
PRKCB-201ENST00000303531 SYCP3Q8IZU3 236 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 ESR2Q92731 530 aa15.95■□□□□ 0.14
PRKCB-201ENST00000303531 CTNNA2P26232 953 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms