RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ALDH3A1P30838 453 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 PAXBP1Q9Y5B6 917 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 AQRO60306 1485 aaKnown RBP eCLIP11.83□□□□□ -0.527e-7■■■■■ 48.1
CLIP1-201ENST00000302528 C6orf229H3BNL8 230 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 HLA-DOAP06340 250 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 SATB1Q01826 763 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 TMEM67Q5HYA8 995 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 DPH6Q7L8W6 267 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 MICALL1Q8N3F8 863 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 TMOD3Q9NYL9 352 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 CABP1Q9NZU7 370 aa11.83□□□□□ -0.52
CLIP1-201ENST00000302528 SUPT6HQ7KZ85 1726 aaKnown RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 ANKRD30BQ9BXX2 1392 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 RFC1P35251 1148 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 PDE4BQ07343 736 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 TRIM7Q9C029 511 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 TFIP11Q9UBB9 837 aaKnown RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 USP16Q9Y5T5 823 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 TMEM110-MUSTN1A8MSY1 372 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 SMARCA5O60264 1052 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 RRAGBQ5VZM2 374 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 CEP120Q8N960 986 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 CCT6BQ92526 530 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 ARFGAP3Q9NP61 516 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 ATP2A2P16615 1042 aaKnown RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 ZNF165P49910 485 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 TAF12Q16514 161 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 PPFIBP2Q8ND30 876 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 GNAT3A8MTJ3 354 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 MCM6Q14566 821 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 KRT222Q8N1A0 295 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 PRPF31Q8WWY3 499 aaKnown RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 TRMT112Q9UI30 125 aaKnown RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 ANKRD50Q9ULJ7 1429 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 LDHCP07864 332 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 KIF5AQ12840 1032 aa11.82□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC117Q8IWD4 279 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC8Q9H0W5 538 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-201ENST00000302528 SETDB1Q15047 1291 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 RPGRIP1LQ68CZ1 1315 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 NAA25Q14CX7 972 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 LMBR1Q8WVP7 490 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 TCHPQ9BT92 498 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 SMIM23A6NLE4 172 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 TACC1O75410 805 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 CRCPO75575 148 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 BAG3O95817 575 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 ZMYND15Q9H091 742 aa11.81□□□□□ -0.52
CLIP1-201ENST00000302528 POLA1P09884 1462 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 NBPF7P0C2Y1 421 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 GEN1Q17RS7 908 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 CPLX4Q7Z7G2 160 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 TMEM57Q8N5G2 664 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 EPSTI1Q96J88 318 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 CTAGE1Q96RT6 745 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 SLC26A6Q9BXS9 759 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 MICU3Q86XE3 530 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 SEC62Q99442 399 aaKnown RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 GJB2P29033 226 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 ORC3Q9UBD5 711 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 C11orf95C9JLR9 678 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 METAP2P50579 478 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 STMN2Q93045 179 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 SLC12A5Q9H2X9 1139 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 KCNK9Q9NPC2 374 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 SSFA2P28290 1259 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 UBASH3AP57075 661 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 NCBP1Q09161 790 aaKnown RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 RRS1Q15050 365 aaKnown RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-201ENST00000302528 HAUS7Q99871 368 aa11.8□□□□□ -0.52
CLIP1-201ENST00000302528 TOPBP1Q92547 1522 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 CIB2O75838 187 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 ZC3H6P61129 1189 aaKnown RBP11.79□□□□□ -0.52
CLIP1-201ENST00000302528 CASQ2O14958 399 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-201ENST00000302528 SLC4A8Q2Y0W8 1093 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 TACC3Q9Y6A5 838 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 STAT6P42226 847 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 MFSD6Q6ZSS7 791 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 GDPD2Q9HCC8 539 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 SAMD15Q9P1V8 674 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 FAM13AO94988 1023 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 PTGS1P23219 599 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 DUSP27Q5VZP5 1158 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 SEPT14Q6ZU15 432 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 MSANTD4Q8NCY6 345 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC114Q96M63 670 aa11.79□□□□□ -0.52
CLIP1-201ENST00000302528 LARP6Q9BRS8 491 aaKnown RBP11.79□□□□□ -0.52
CLIP1-201ENST00000302528 GAS8O95995 478 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 MCM5P33992 734 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLIP1-201ENST00000302528 ATP6V0A2Q9Y487 856 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 EBAG9O00559 213 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 THEMISQ8N1K5 641 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-201ENST00000302528 RSRC1Q96IZ7 334 aaKnown RBP11.78□□□□□ -0.52
CLIP1-201ENST00000302528 MIS18AQ9NYP9 233 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 DNAI1Q9UI46 699 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 TLDC2A0PJX2 215 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 CAVIN2O95810 425 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 AFMP43652 599 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms