RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 BICDL1Q6ZP65 573 aa11.15□□□□□ -0.62
PRDM9-201ENST00000296682 CWC22Q9HCG8 908 aaKnown RBP11.15□□□□□ -0.62
PRDM9-201ENST00000296682 CWC25Q9NXE8 425 aaPredicted RBP11.15□□□□□ -0.62
PRDM9-201ENST00000296682 HAND2P61296 217 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 KAZALD1Q96I82 304 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.14□□□□□ -0.63
PRDM9-201ENST00000296682 KDM6AO15550 1401 aaPredicted RBP11.14□□□□□ -0.63
PRDM9-201ENST00000296682 SPATA31A3Q5VYP0 1347 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 A0A0D9SFI3 127 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 NASPP49321 788 aaPredicted RBP11.14□□□□□ -0.63
PRDM9-201ENST00000296682 MRE11P49959 708 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 PUS3Q9BZE2 481 aaKnown RBP11.14□□□□□ -0.63
PRDM9-201ENST00000296682 CNNM1Q9NRU3 951 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 TOMM22Q9NS69 142 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 CEP126Q9P2H0 1117 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 GTF2E1P29083 439 aaPredicted RBP11.14□□□□□ -0.63
PRDM9-201ENST00000296682 LRRC24Q50LG9 513 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 BLOC1S2Q6QNY1 142 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 KIF6Q6ZMV9 814 aa11.14□□□□□ -0.63
PRDM9-201ENST00000296682 ANKRD36CQ5JPF3 1778 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 JCADQ9P266 1359 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 NBPF26B4DH59 902 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 NBPF14Q5TI25 921 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 RNF20Q5VTR2 975 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 NBPF10Q6P3W6 841 aaKnown RBP11.13□□□□□ -0.63
PRDM9-201ENST00000296682 NBPF15Q8N660 670 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 TFIP11Q9UBB9 837 aaKnown RBP11.13□□□□□ -0.63
PRDM9-201ENST00000296682 KCPQ6ZWJ8 1503 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 FBXW7Q969H0 707 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 LIMCH1Q9UPQ0 1083 aa11.13□□□□□ -0.63
PRDM9-201ENST00000296682 EXOC5O00471 708 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 IFIT1P09914 478 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 MCM2P49736 904 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 CHMP4CQ96CF2 233 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 TRMT112Q9UI30 125 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 DBNLQ9UJU6 430 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 ISY1Q9ULR0 285 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 LARP1BQ659C4 914 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 LRP10Q7Z4F1 713 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 DNAJC5Q9H3Z4 198 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 NSFL1CQ9UNZ2 370 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 CNPY2Q9Y2B0 182 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 TNS3Q68CZ2 1445 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 GJB2P29033 226 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 HSPA4P34932 840 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 PRIM1P49642 420 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 CCT2P78371 535 aaKnown RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 GUCY1B3Q02153 619 aa11.12□□□□□ -0.63
PRDM9-201ENST00000296682 ZNF589Q86UQ0 364 aaPredicted RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 IQSEC3Q9UPP2 1182 aaPredicted RBP11.12□□□□□ -0.63
PRDM9-201ENST00000296682 LARGE1O95461 756 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 TNNI3KQ59H18 835 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 TTC39AQ5SRH9 613 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 CREB3L3Q68CJ9 461 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 PLBD2Q8NHP8 589 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 FPGT-TNNI3KV9GXZ4 949 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 H3BQV1 296 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 STARD3NLO95772 234 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 IFFO2Q5TF58 517 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 FAM184AQ8NB25 1140 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 KCNB2Q92953 911 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 TAF6LQ9Y6J9 622 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 TNS2Q63HR2 1409 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 GADD45BO75293 160 aaPredicted RBP11.11□□□□□ -0.63
PRDM9-201ENST00000296682 IDH1O75874 414 aaKnown RBP11.11□□□□□ -0.63
PRDM9-201ENST00000296682 METTL24Q5JXM2 366 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 LDHAL6AQ6ZMR3 332 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 KLHL34Q8N239 644 aa11.11□□□□□ -0.63
PRDM9-201ENST00000296682 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.11□□□□□ -0.63
PRDM9-201ENST00000296682 ARAP2Q8WZ64 1704 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 MYH15Q9Y2K3 1946 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 PTPN12Q05209 780 aaKnown RBP11.1□□□□□ -0.63
PRDM9-201ENST00000296682 SMIM5Q71RC9 77 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 LSG1Q9H089 658 aaKnown RBP11.1□□□□□ -0.63
PRDM9-201ENST00000296682 TTC41PQ6P2S7 1318 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 RAD50Q92878 1312 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 PCDH11XQ9BZA7 1347 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 PCDH11YQ9BZA8 1340 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 SNAP23O00161 211 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 COL9A3Q14050 684 aaPredicted RBP11.1□□□□□ -0.63
PRDM9-201ENST00000296682 FAM182BQ5T319 152 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 CCDC24Q8N4L8 307 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 ZDHHC9Q9Y397 364 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 ANAPC15P60006 121 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 PI16Q6UXB8 463 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 RUFY3Q7L099 469 aa11.1□□□□□ -0.63
PRDM9-201ENST00000296682 MEGF6O75095 1541 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 ITGB4P16144 1822 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 IFIT5Q13325 482 aaKnown RBP11.09□□□□□ -0.63
PRDM9-201ENST00000296682 ZSCAN23Q3MJ62 389 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 ANO8Q9HCE9 1232 aaPredicted RBP11.09□□□□□ -0.63
PRDM9-201ENST00000296682 CCDC171Q6TFL3 1326 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 HCLS1P14317 486 aaPredicted RBP11.09□□□□□ -0.63
PRDM9-201ENST00000296682 CAMK4Q16566 473 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 USP48Q86UV5 1035 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 PIGBQ92521 554 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 LMBRD1Q9NUN5 540 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 WDR17Q8IZU2 1322 aa11.09□□□□□ -0.63
PRDM9-201ENST00000296682 WDR33Q9C0J8 1336 aaKnown RBP11.09□□□□□ -0.63
PRDM9-201ENST00000296682 A0A1B0GUL7 405 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms