RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 HSP90B1P14625 803 aaKnown RBP16.94■□□□□ 0.3
VPS28-201ENST00000292510 CTSWP56202 376 aa16.94■□□□□ 0.3
VPS28-201ENST00000292510 GRAPQ13588 217 aa16.94■□□□□ 0.3
VPS28-201ENST00000292510 C9orf131Q5VYM1 1079 aa16.94■□□□□ 0.3
VPS28-201ENST00000292510 GRAPLQ8TC17 118 aaPredicted RBP16.94■□□□□ 0.3
VPS28-201ENST00000292510 RNF181Q9P0P0 153 aa16.94■□□□□ 0.3
VPS28-201ENST00000292510 TAF1P21675 1872 aa16.94■□□□□ 0.3
VPS28-201ENST00000292510 GRM8O00222 908 aa16.93■□□□□ 0.3
VPS28-201ENST00000292510 SOGA3Q5TF21 947 aa16.93■□□□□ 0.3
VPS28-201ENST00000292510 TAOK3Q9H2K8 898 aa16.93■□□□□ 0.3
VPS28-201ENST00000292510 KIF16BQ96L93 1317 aa16.93■□□□□ 0.3
VPS28-201ENST00000292510 FER1L6Q2WGJ9 1857 aa16.93■□□□□ 0.3
VPS28-201ENST00000292510 CCDC152Q4G0S7 254 aa16.92■□□□□ 0.3
VPS28-201ENST00000292510 TTLL11Q8NHH1 800 aa16.92■□□□□ 0.3
VPS28-201ENST00000292510 FRAT1Q92837 279 aaPredicted RBP16.92■□□□□ 0.3
VPS28-201ENST00000292510 C9orf78Q9NZ63 289 aaPredicted RBP16.92■□□□□ 0.3
VPS28-201ENST00000292510 TNNQ9UQP3 1299 aa16.92■□□□□ 0.3
VPS28-201ENST00000292510 ATP6V0A2Q9Y487 856 aa16.92■□□□□ 0.3
VPS28-201ENST00000292510 SNED1Q8TER0 1413 aa16.92■□□□□ 0.3
VPS28-201ENST00000292510 BBOX1O75936 387 aa16.91■□□□□ 0.3
VPS28-201ENST00000292510 LMNB1P20700 586 aa16.91■□□□□ 0.3
VPS28-201ENST00000292510 PLA2G12BQ9BX93 195 aa16.91■□□□□ 0.3
VPS28-201ENST00000292510 API5Q9BZZ5 524 aaKnown RBP16.91■□□□□ 0.3
VPS28-201ENST00000292510 GREM2Q9H772 168 aa16.91■□□□□ 0.3
VPS28-201ENST00000292510 NBPF7P0C2Y1 421 aaPredicted RBP16.9■□□□□ 0.3
VPS28-201ENST00000292510 FKBP4Q02790 459 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS28-201ENST00000292510 EPHA10Q5JZY3 1008 aa16.9■□□□□ 0.3
VPS28-201ENST00000292510 RTKN2Q8IZC4 609 aa16.9■□□□□ 0.3
VPS28-201ENST00000292510 ZNF277Q9NRM2 450 aaPredicted RBP16.9■□□□□ 0.3
VPS28-201ENST00000292510 LTBP3Q9NS15 1303 aa16.9■□□□□ 0.3
VPS28-201ENST00000292510 SBF1O95248 1867 aa16.89■□□□□ 0.29
VPS28-201ENST00000292510 TRIM27P14373 513 aa16.89■□□□□ 0.29
VPS28-201ENST00000292510 RPS8P62241 208 aaKnown RBP16.89■□□□□ 0.29
VPS28-201ENST00000292510 FOXO4P98177 505 aa16.89■□□□□ 0.29
VPS28-201ENST00000292510 SP8Q8IXZ3 490 aa16.89■□□□□ 0.29
VPS28-201ENST00000292510 ZNF784Q8NCA9 323 aaPredicted RBP16.89■□□□□ 0.29
VPS28-201ENST00000292510 ARHGAP45Q92619 1136 aa16.89■□□□□ 0.29
VPS28-201ENST00000292510 SUCLG2Q96I99 432 aa16.89■□□□□ 0.29
VPS28-201ENST00000292510 FAM161AQ3B820 660 aa16.88■□□□□ 0.29
VPS28-201ENST00000292510 CC2D2BQ6DHV5 1058 aa16.88■□□□□ 0.29
VPS28-201ENST00000292510 USP44Q9H0E7 712 aa16.88■□□□□ 0.29
VPS28-201ENST00000292510 CSF1RP07333 972 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 CCT4P50991 539 aaKnown RBP16.87■□□□□ 0.29
VPS28-201ENST00000292510 ATF7IPQ6VMQ6 1270 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 ZNF526Q8TF50 670 aaPredicted RBP16.87■□□□□ 0.29
VPS28-201ENST00000292510 CLUAP1Q96AJ1 413 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 KAZALD1Q96I82 304 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 PSMD1Q99460 953 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 TMX4Q9H1E5 349 aaPredicted RBP16.87■□□□□ 0.29
VPS28-201ENST00000292510 MYH3P11055 1940 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 UTYO14607 1347 aa16.87■□□□□ 0.29
VPS28-201ENST00000292510 IPO8O15397 1037 aaKnown RBP16.86■□□□□ 0.29
VPS28-201ENST00000292510 ITGA6P23229 1130 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 LMBR1LQ6UX01 489 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 TMC4Q7Z404 712 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 ANKRD18AQ8IVF6 992 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 MPNDQ8N594 471 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 CHMP3Q9Y3E7 222 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 RTL9Q8NET4 1388 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 CCDC88AQ3V6T2 1871 aa16.86■□□□□ 0.29
VPS28-201ENST00000292510 ZKSCAN2Q63HK3 967 aa16.85■□□□□ 0.29
VPS28-201ENST00000292510 DPP8Q6V1X1 898 aaPredicted RBP16.85■□□□□ 0.29
VPS28-201ENST00000292510 CDC5LQ99459 802 aaKnown RBP16.85■□□□□ 0.29
VPS28-201ENST00000292510 LRRC37AA6NMS7 1700 aa16.84■□□□□ 0.29
VPS28-201ENST00000292510 IARSP41252 1262 aaKnown RBP16.84■□□□□ 0.29
VPS28-201ENST00000292510 GPSM2P81274 684 aa16.84■□□□□ 0.29
VPS28-201ENST00000292510 GRIPAP1Q4V328 841 aa16.84■□□□□ 0.29
VPS28-201ENST00000292510 BICC1Q9H694 974 aaKnown RBP16.84■□□□□ 0.29
VPS28-201ENST00000292510 COL4A5P29400 1685 aa16.83■□□□□ 0.28
VPS28-201ENST00000292510 INTS3Q68E01 1043 aaKnown RBP16.83■□□□□ 0.28
VPS28-201ENST00000292510 TIAM2Q8IVF5 1701 aa16.83■□□□□ 0.28
VPS28-201ENST00000292510 NSFL1CQ9UNZ2 370 aaKnown RBP16.83■□□□□ 0.28
VPS28-201ENST00000292510 DUOX1Q9NRD9 1551 aa16.82■□□□□ 0.28
VPS28-201ENST00000292510 ANKRD18BA2A2Z9 1011 aa16.82■□□□□ 0.28
VPS28-201ENST00000292510 IGHMBP2P38935 993 aaKnown RBP16.82■□□□□ 0.28
VPS28-201ENST00000292510 AOC3Q16853 763 aa16.82■□□□□ 0.28
VPS28-201ENST00000292510 ANKRD44Q8N8A2 993 aa16.82■□□□□ 0.28
VPS28-201ENST00000292510 ZNF594Q96JF6 807 aaPredicted RBP16.82■□□□□ 0.28
VPS28-201ENST00000292510 MEIS3Q99687 375 aa16.82■□□□□ 0.28
VPS28-201ENST00000292510 RTFDC1Q9BY42 306 aaPredicted RBP16.82■□□□□ 0.28
VPS28-201ENST00000292510 BSDC1Q9NW68 430 aaPredicted RBP16.82■□□□□ 0.28
VPS28-201ENST00000292510 RCAN3Q9UKA8 241 aa16.82■□□□□ 0.28
VPS28-201ENST00000292510 PPIP5K2O43314 1243 aa16.81■□□□□ 0.28
VPS28-201ENST00000292510 IFIT5Q13325 482 aaKnown RBP16.81■□□□□ 0.28
VPS28-201ENST00000292510 LARGE2Q8N3Y3 721 aa16.81■□□□□ 0.28
VPS28-201ENST00000292510 TMEM57Q8N5G2 664 aa16.81■□□□□ 0.28
VPS28-201ENST00000292510 GPR101Q96P66 508 aaPredicted RBP16.81■□□□□ 0.28
VPS28-201ENST00000292510 POLLQ9UGP5 575 aa16.81■□□□□ 0.28
VPS28-201ENST00000292510 SPEF2Q9C093 1822 aa16.81■□□□□ 0.28
VPS28-201ENST00000292510 DICER1Q9UPY3 1922 aaKnown RBP16.8■□□□□ 0.28
VPS28-201ENST00000292510 ZC3H4Q9UPT8 1303 aaKnown RBP16.8■□□□□ 0.28
VPS28-201ENST00000292510 UBTFL1P0CB47 393 aaPredicted RBP16.8■□□□□ 0.28
VPS28-201ENST00000292510 RLBP1P12271 317 aa16.8■□□□□ 0.28
VPS28-201ENST00000292510 RABL6Q3YEC7 729 aaPredicted RBP16.8■□□□□ 0.28
VPS28-201ENST00000292510 GPBP1L1Q9HC44 474 aaPredicted RBP16.8■□□□□ 0.28
VPS28-201ENST00000292510 ANKIB1Q9P2G1 1089 aa16.8■□□□□ 0.28
VPS28-201ENST00000292510 MINPP1Q9UNW1 487 aa16.8■□□□□ 0.28
VPS28-201ENST00000292510 WTIPA6NIX2 430 aaPredicted RBP16.79■□□□□ 0.28
VPS28-201ENST00000292510 C6orf229H3BNL8 230 aa16.79■□□□□ 0.28
VPS28-201ENST00000292510 PLIN1O60240 522 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 141 ms