RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 ANKRD45Q5TZF3 282 aa23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 DDX60Q8IY21 1712 aaKnown RBP23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 ABCC12Q96J65 1359 aa23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 PA2G4Q9UQ80 394 aaKnown RBP23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 FAM161AQ3B820 660 aa23.44■■□□□ 1.34
PDLIM3-202ENST00000284770 PRR5LQ6MZQ0 368 aa23.44■■□□□ 1.34
PDLIM3-202ENST00000284770 GREM2Q9H772 168 aa23.44■■□□□ 1.34
PDLIM3-202ENST00000284770 LAMB2P55268 1798 aa23.44■■□□□ 1.34
PDLIM3-202ENST00000284770 RAB11FIP3O75154 756 aa23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 IFIT5Q13325 482 aaKnown RBP23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 MSL1Q68DK7 614 aa23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 KLHDC4Q8TBB5 520 aa23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 CCDC85AQ96PX6 553 aaPredicted RBP23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 PDGFDQ9GZP0 370 aaPredicted RBP23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 MYH3P11055 1940 aa23.43■■□□□ 1.34
PDLIM3-202ENST00000284770 CCDC152Q4G0S7 254 aa23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 CHD1LQ86WJ1 897 aa23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 MMP10P09238 476 aa23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 ITGA6P23229 1130 aa23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 SF3B3Q15393 1217 aaKnown RBP23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 SLC16A10Q8TF71 515 aa23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 NLRP3Q96P20 1036 aa23.42■■□□□ 1.34
PDLIM3-202ENST00000284770 APBB1O00213 710 aa23.41■■□□□ 1.34
PDLIM3-202ENST00000284770 ST5P78524 1137 aa23.41■■□□□ 1.34
PDLIM3-202ENST00000284770 CCDC24Q8N4L8 307 aa23.41■■□□□ 1.34
PDLIM3-202ENST00000284770 PARP3Q9Y6F1 533 aa23.41■■□□□ 1.34
PDLIM3-202ENST00000284770 RTL9Q8NET4 1388 aa23.41■■□□□ 1.34
PDLIM3-202ENST00000284770 ANKRD18BA2A2Z9 1011 aa23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 G3BP1Q13283 466 aaKnown RBP eCLIP23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 C3orf67Q6ZVT6 689 aa23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 LRRCC1Q9C099 1032 aa23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 OS9Q13438 667 aaPredicted RBP23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 SIL1Q9H173 461 aa23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 ZBTB47Q9UFB7 747 aaPredicted RBP23.4■■□□□ 1.34
PDLIM3-202ENST00000284770 RIC1Q4ADV7 1423 aa23.39■■□□□ 1.34
PDLIM3-202ENST00000284770 ERC1Q8IUD2 1116 aa23.39■■□□□ 1.33
PDLIM3-202ENST00000284770 ZNF594Q96JF6 807 aaPredicted RBP23.39■■□□□ 1.33
PDLIM3-202ENST00000284770 LNPKQ9C0E8 428 aa23.39■■□□□ 1.33
PDLIM3-202ENST00000284770 RHPN1Q8TCX5 695 aa23.38■■□□□ 1.33
PDLIM3-202ENST00000284770 KIF1BPQ96EK5 621 aa23.38■■□□□ 1.33
PDLIM3-202ENST00000284770 TAF7LQ5H9L4 462 aa23.37■■□□□ 1.33
PDLIM3-202ENST00000284770 FBXO3Q9UK99 471 aa23.37■■□□□ 1.33
PDLIM3-202ENST00000284770 SMARCA5O60264 1052 aaPredicted RBP23.37■■□□□ 1.33
PDLIM3-202ENST00000284770 NRXN2Q9P2S2 1712 aa23.37■■□□□ 1.33
PDLIM3-202ENST00000284770 EYA2O00167 538 aa23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 CIAO1O76071 339 aa23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 SASH1O94885 1247 aa23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 R3HDM1Q15032 1099 aaKnown RBP23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 SEC31BQ9NQW1 1179 aa23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 RGS3P49796 1198 aa23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 ATG9AQ7Z3C6 839 aa23.35■■□□□ 1.33
PDLIM3-202ENST00000284770 PDE4AP27815 886 aa23.34■■□□□ 1.33
PDLIM3-202ENST00000284770 IL15P40933 162 aaPredicted RBP23.34■■□□□ 1.33
PDLIM3-202ENST00000284770 BRIP1Q9BX63 1249 aa23.34■■□□□ 1.33
PDLIM3-202ENST00000284770 PUS3Q9BZE2 481 aaKnown RBP23.34■■□□□ 1.33
PDLIM3-202ENST00000284770 TNRC6CQ9HCJ0 1690 aaKnown RBP23.33■■□□□ 1.33
PDLIM3-202ENST00000284770 LRRC24Q50LG9 513 aa23.33■■□□□ 1.33
PDLIM3-202ENST00000284770 LDHAL6AQ6ZMR3 332 aa23.33■■□□□ 1.33
PDLIM3-202ENST00000284770 CDC5LQ99459 802 aaKnown RBP23.33■■□□□ 1.33
PDLIM3-202ENST00000284770 IL1RAPL2Q9NP60 686 aa23.33■■□□□ 1.33
PDLIM3-202ENST00000284770 KLRG2A4D1S0 409 aaPredicted RBP23.32■■□□□ 1.32
PDLIM3-202ENST00000284770 CRY2Q49AN0 593 aa23.32■■□□□ 1.32
PDLIM3-202ENST00000284770 C16orf71Q8IYS4 520 aaPredicted RBP23.31■■□□□ 1.32
PDLIM3-202ENST00000284770 BCL11AQ9H165 835 aa23.31■■□□□ 1.32
PDLIM3-202ENST00000284770 RIPOR2Q9Y4F9 1068 aa23.31■■□□□ 1.32
PDLIM3-202ENST00000284770 IGHMBP2P38935 993 aaKnown RBP23.3■■□□□ 1.32
PDLIM3-202ENST00000284770 DDX46Q7L014 1031 aaKnown RBP23.3■■□□□ 1.32
PDLIM3-202ENST00000284770 CLASRPQ8N2M8 674 aaKnown RBP23.3■■□□□ 1.32
PDLIM3-202ENST00000284770 MPHOSPH8Q99549 860 aa23.3■■□□□ 1.32
PDLIM3-202ENST00000284770 CNNM1Q9NRU3 951 aa23.3■■□□□ 1.32
PDLIM3-202ENST00000284770 CASZ1Q86V15 1759 aa23.3■■□□□ 1.32
PDLIM3-202ENST00000284770 TFCP2Q12800 502 aa23.29■■□□□ 1.32
PDLIM3-202ENST00000284770 MTFR1LQ9H019 292 aa23.29■■□□□ 1.32
PDLIM3-202ENST00000284770 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.29■■□□□ 1.32
PDLIM3-202ENST00000284770 ZBTB7AO95365 584 aa23.29■■□□□ 1.32
PDLIM3-202ENST00000284770 ANKRD18AQ8IVF6 992 aa23.29■■□□□ 1.32
PDLIM3-202ENST00000284770 RPGRQ92834 1020 aaKnown RBP23.29■■□□□ 1.32
PDLIM3-202ENST00000284770 LRP5O75197 1615 aa23.28■■□□□ 1.32
PDLIM3-202ENST00000284770 PDE6BP35913 854 aa23.28■■□□□ 1.32
PDLIM3-202ENST00000284770 TSHZ2Q9NRE2 1034 aa23.28■■□□□ 1.32
PDLIM3-202ENST00000284770 RPS8P62241 208 aaKnown RBP23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 OTUD7AQ8TE49 926 aaPredicted RBP23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 CELF1Q92879 486 aaKnown RBP23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 CEP126Q9P2H0 1117 aa23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 PSDA5PKW4 1024 aaPredicted RBP23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 HOXA10P31260 410 aaPredicted RBP23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 PLEKHM2Q8IWE5 1019 aa23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 BSDC1Q9NW68 430 aaPredicted RBP23.27■■□□□ 1.32
PDLIM3-202ENST00000284770 MROH5Q6ZUA9 1318 aa23.26■■□□□ 1.31
PDLIM3-202ENST00000284770 EAF2Q96CJ1 260 aaPredicted RBP23.26■■□□□ 1.31
PDLIM3-202ENST00000284770 RBM17Q96I25 401 aaKnown RBP23.26■■□□□ 1.31
PDLIM3-202ENST00000284770 GPR108Q9NPR9 543 aa23.26■■□□□ 1.31
PDLIM3-202ENST00000284770 ANKRD31Q8N7Z5 1873 aa23.26■■□□□ 1.31
PDLIM3-202ENST00000284770 COL4A1P02462 1669 aa23.25■■□□□ 1.31
PDLIM3-202ENST00000284770 SALL3Q9BXA9 1300 aa23.25■■□□□ 1.31
PDLIM3-202ENST00000284770 GRAPQ13588 217 aa23.24■■□□□ 1.31
PDLIM3-202ENST00000284770 TNNI3KQ59H18 835 aa23.24■■□□□ 1.31
PDLIM3-202ENST00000284770 METTL24Q5JXM2 366 aa23.24■■□□□ 1.31
PDLIM3-202ENST00000284770 AACSQ86V21 672 aa23.24■■□□□ 1.31
PDLIM3-202ENST00000284770 GRAPLQ8TC17 118 aaPredicted RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 137.6 ms