RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 JMYQ8N9B5 988 aa12.61□□□□□ -0.39
VPS41-201ENST00000265745 ABCC4O15439 1325 aa12.61□□□□□ -0.39
VPS41-201ENST00000265745 ATP5J2-PTCD1G3V325 749 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 TPRNQ4KMQ1 711 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 SP8Q8IXZ3 490 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 HS6ST3Q8IZP7 471 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 GPC2Q8N158 579 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 LARGE2Q8N3Y3 721 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 C8orf58Q8NAV2 365 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 TMX4Q9H1E5 349 aaPredicted RBP12.6□□□□□ -0.39
VPS41-201ENST00000265745 HACL1Q9UJ83 578 aa12.6□□□□□ -0.39
VPS41-201ENST00000265745 FER1L6Q2WGJ9 1857 aa12.59□□□□□ -0.39
VPS41-201ENST00000265745 DDX46Q7L014 1031 aaKnown RBP12.59□□□□□ -0.39
VPS41-201ENST00000265745 LDHDQ86WU2 507 aa12.59□□□□□ -0.39
VPS41-201ENST00000265745 FAM89AQ96GI7 184 aa12.59□□□□□ -0.39
VPS41-201ENST00000265745 RTFDC1Q9BY42 306 aaPredicted RBP12.59□□□□□ -0.39
VPS41-201ENST00000265745 VPS33BQ9H267 617 aa12.59□□□□□ -0.39
VPS41-201ENST00000265745 PHAXQ9H814 394 aaKnown RBP12.59□□□□□ -0.39
VPS41-201ENST00000265745 EPHX2P34913 555 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 EIF6P56537 245 aaKnown RBP12.58□□□□□ -0.4
VPS41-201ENST00000265745 GRAPQ13588 217 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 GSE1Q14687 1217 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 SF3B3Q15393 1217 aaKnown RBP12.58□□□□□ -0.4
VPS41-201ENST00000265745 CCDC27Q2M243 656 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 RIC3Q7Z5B4 369 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 TSPYL6Q8N831 410 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 GRAPLQ8TC17 118 aaPredicted RBP12.58□□□□□ -0.4
VPS41-201ENST00000265745 RNF25Q96BH1 459 aaPredicted RBP12.58□□□□□ -0.4
VPS41-201ENST00000265745 WDR90Q96KV7 1748 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 CHMP4AQ9BY43 222 aa12.58□□□□□ -0.4
VPS41-201ENST00000265745 TNRC6CQ9HCJ0 1690 aaKnown RBP12.57□□□□□ -0.4
VPS41-201ENST00000265745 ZNF316A6NFI3 1004 aaPredicted RBP12.57□□□□□ -0.4
VPS41-201ENST00000265745 PPIP5K2O43314 1243 aa12.57□□□□□ -0.4
VPS41-201ENST00000265745 ITGBL1O95965 494 aaPredicted RBP12.57□□□□□ -0.4
VPS41-201ENST00000265745 EAPPQ56P03 285 aaPredicted RBP12.57□□□□□ -0.4
VPS41-201ENST00000265745 PNMA8AQ86V59 439 aaPredicted RBP12.57□□□□□ -0.4
VPS41-201ENST00000265745 WWC1Q8IX03 1113 aa12.57□□□□□ -0.4
VPS41-201ENST00000265745 SUPT20HQ8NEM7 779 aa12.57□□□□□ -0.4
VPS41-201ENST00000265745 GJA3Q9Y6H8 435 aa12.57□□□□□ -0.4
VPS41-201ENST00000265745 GOLGA2Q08379 1002 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 AOC3Q16853 763 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 RTL5Q5HYW3 569 aaPredicted RBP12.56□□□□□ -0.4
VPS41-201ENST00000265745 CCDC30Q5VVM6 783 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 DPP8Q6V1X1 898 aaPredicted RBP12.56□□□□□ -0.4
VPS41-201ENST00000265745 TMC4Q7Z404 712 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 NIM1KQ8IY84 436 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 MPNDQ8N594 471 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 TSR2Q969E8 191 aaKnown RBP12.56□□□□□ -0.4
VPS41-201ENST00000265745 CREBZFQ9NS37 354 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 PASKQ96RG2 1323 aa12.56□□□□□ -0.4
VPS41-201ENST00000265745 IRS4O14654 1257 aaPredicted RBP12.55□□□□□ -0.4
VPS41-201ENST00000265745 ANP32CO43423 234 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 SCNN1DP51172 638 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 NUBP1P53384 320 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 CACNB1Q02641 598 aaPredicted RBP12.55□□□□□ -0.4
VPS41-201ENST00000265745 KIAA2012Q0VF49 1180 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 ZBTB38Q8NAP3 1195 aaPredicted RBP12.55□□□□□ -0.4
VPS41-201ENST00000265745 MRS2Q9HD23 443 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 ZNRF3Q9ULT6 936 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 CLEC11AQ9Y240 323 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 NUP98P52948 1817 aa12.55□□□□□ -0.4
VPS41-201ENST00000265745 COL4A5P29400 1685 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 EPS15P42566 896 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 CXCL9Q07325 125 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 IFFO2Q5TF58 517 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 CNTROBQ8N137 903 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 CCDC191Q8NCU4 936 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 CELF1Q92879 486 aaKnown RBP12.54□□□□□ -0.4
VPS41-201ENST00000265745 MYD88Q99836 296 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 METTL22Q9BUU2 404 aaPredicted RBP12.54□□□□□ -0.4
VPS41-201ENST00000265745 TIAM2Q8IVF5 1701 aa12.54□□□□□ -0.4
VPS41-201ENST00000265745 ARFGEF2Q9Y6D5 1785 aa12.53□□□□□ -0.4
VPS41-201ENST00000265745 DDX58O95786 925 aaKnown RBP12.53□□□□□ -0.4
VPS41-201ENST00000265745 LMOD1P29536 600 aaPredicted RBP12.53□□□□□ -0.4
VPS41-201ENST00000265745 RPS8P62241 208 aaKnown RBP12.53□□□□□ -0.4
VPS41-201ENST00000265745 MAP1SQ66K74 1059 aaPredicted RBP12.53□□□□□ -0.4
VPS41-201ENST00000265745 IL16Q14005 1332 aa12.53□□□□□ -0.4
VPS41-201ENST00000265745 PI4KAP2A4QPH2 592 aa12.52□□□□□ -0.41
VPS41-201ENST00000265745 PCCAP05165 728 aaPredicted RBP12.52□□□□□ -0.41
VPS41-201ENST00000265745 HSP90B1P14625 803 aaKnown RBP12.52□□□□□ -0.41
VPS41-201ENST00000265745 KSR2Q6VAB6 950 aa12.52□□□□□ -0.41
VPS41-201ENST00000265745 PI4KAP1Q8N8J0 262 aa12.52□□□□□ -0.41
VPS41-201ENST00000265745 CWC25Q9NXE8 425 aaPredicted RBP12.52□□□□□ -0.41
VPS41-201ENST00000265745 NSFL1CQ9UNZ2 370 aaKnown RBP12.52□□□□□ -0.41
VPS41-201ENST00000265745 MAP3K2Q9Y2U5 619 aa12.52□□□□□ -0.41
VPS41-201ENST00000265745 TMEM88BA6NKF7 163 aa12.51□□□□□ -0.41
VPS41-201ENST00000265745 TWISTNBQ3B726 338 aaPredicted RBP12.51□□□□□ -0.41
VPS41-201ENST00000265745 USP50Q70EL3 339 aaPredicted RBP12.51□□□□□ -0.41
VPS41-201ENST00000265745 JARID2Q92833 1246 aaPredicted RBP12.51□□□□□ -0.41
VPS41-201ENST00000265745 STK31Q9BXU1 1019 aa12.51□□□□□ -0.41
VPS41-201ENST00000265745 GPRC5DQ9NZD1 345 aa12.51□□□□□ -0.41
VPS41-201ENST00000265745 POLLQ9UGP5 575 aa12.51□□□□□ -0.41
VPS41-201ENST00000265745 CCDC88AQ3V6T2 1871 aa12.51□□□□□ -0.41
VPS41-201ENST00000265745 DICER1Q9UPY3 1922 aaKnown RBP12.5□□□□□ -0.41
VPS41-201ENST00000265745 YDJCA8MPS7 323 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 PDE8AO60658 829 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 RAD17O75943 681 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 IGKV5-2P06315 115 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 GMPSP49915 693 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms