RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZSCAN30Q86W11 494 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 CEP57Q86XR8 500 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 SCAPERQ9BY12 1400 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 MFSD6Q6ZSS7 791 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 ZNF710Q8N1W2 664 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 MIPOL1Q8TD10 442 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.94□□□□□ -0.34
PTPN4-201ENST00000263708 TTC14Q96N46 770 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 PPANQ9NQ55 473 aaKnown RBP12.94□□□□□ -0.34
PTPN4-201ENST00000263708 ST5P78524 1137 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 GLRX3O76003 335 aaKnown RBP12.94□□□□□ -0.34
PTPN4-201ENST00000263708 PYM1Q9BRP8 204 aaKnown RBP12.94□□□□□ -0.34
PTPN4-201ENST00000263708 TSPY3P0CV98 308 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 TSPY8P0CW00 308 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 TBC1D31Q96DN5 1066 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 KCNK9Q9NPC2 374 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 PPFIA3O75145 1194 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 GPTP24298 496 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 PRPHP41219 470 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 GNG11P61952 73 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 PDE3AQ14432 1141 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 SH2B1Q9NRF2 756 aaPredicted RBP12.94□□□□□ -0.34
PTPN4-201ENST00000263708 N4BP3O15049 544 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 GOLGA6L9A6NEM1 432 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 WDR63Q8IWG1 891 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 AFMP43652 599 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 FLIIQ13045 1269 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 HEATR3Q7Z4Q2 680 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 VPS52Q8N1B4 723 aa12.94□□□□□ -0.34
PTPN4-201ENST00000263708 GOLIM4O00461 696 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC129Q6ZRS4 1044 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 METAP2P50579 478 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC8Q9H0W5 538 aaPredicted RBP12.93□□□□□ -0.34
PTPN4-201ENST00000263708 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTPN4-201ENST00000263708 RTEL1-TNFRSF6BF6WH68 1400 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 PPP2R5CQ13362 524 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 KANK3Q6NY19 840 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 RSPH14Q9UHP6 348 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 ZBTB21Q9ULJ3 1066 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 TACC3Q9Y6A5 838 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC121Q6ZUS5 278 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 F8W031 263 aaPredicted RBP12.93□□□□□ -0.34
PTPN4-201ENST00000263708 KMT5BQ4FZB7 885 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 RMND1Q9NWS8 449 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 PPP1R7Q15435 360 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 HSP90AA4PQ58FG1 418 aa12.93□□□□□ -0.34
PTPN4-201ENST00000263708 MCM4P33991 863 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 KIFC2Q96AC6 838 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 STX8Q9UNK0 236 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 CUX1P39880 1505 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 ALDH3A1P30838 453 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 HAND2P61296 217 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 GBP7Q8N8V2 638 aaPredicted RBP12.92□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC170Q8IYT3 715 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 THEMISQ8N1K5 641 aaPredicted RBP12.92□□□□□ -0.34
PTPN4-201ENST00000263708 RNF34Q969K3 372 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 USP25Q9UHP3 1055 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 CIB2O75838 187 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 HSPA1LP34931 641 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 PPP1R21Q6ZMI0 780 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 ZNF692Q9BU19 519 aaPredicted RBP12.92□□□□□ -0.34
PTPN4-201ENST00000263708 STIM2Q9P246 746 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 RRAGBQ5VZM2 374 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 E7EVH7 732 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 MSANTD4Q8NCY6 345 aa12.92□□□□□ -0.34
PTPN4-201ENST00000263708 ZHX1Q9UKY1 873 aaPredicted RBP12.92□□□□□ -0.34
PTPN4-201ENST00000263708 IRX5P78411 483 aaPredicted RBP12.91□□□□□ -0.34
PTPN4-201ENST00000263708 PLEKHH1Q9ULM0 1364 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 AGTPBP1Q9UPW5 1226 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 AKNAQ7Z591 1439 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC110Q8TBZ0 833 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 ZFYP08048 801 aaPredicted RBP12.91□□□□□ -0.34
PTPN4-201ENST00000263708 RFC4P35249 363 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 NEMFO60524 1076 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 FCHSD2O94868 740 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 IARSP41252 1262 aaKnown RBP12.91□□□□□ -0.34
PTPN4-201ENST00000263708 MCM6Q14566 821 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 CAPZA3Q96KX2 299 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 STMN2Q93045 179 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 PSMD6Q15008 389 aa12.91□□□□□ -0.34
PTPN4-201ENST00000263708 CIZ1Q9ULV3 898 aaPredicted RBP12.91□□□□□ -0.34
PTPN4-201ENST00000263708 ADCY5O95622 1261 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 PICALMQ13492 652 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 RIOK3O14730 519 aaKnown RBP12.9□□□□□ -0.34
PTPN4-201ENST00000263708 ATP6V0A2Q9Y487 856 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 USP16Q9Y5T5 823 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 GJB2P29033 226 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 NGLY1Q96IV0 654 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 CYLC1P35663 651 aaPredicted RBP12.9□□□□□ -0.34
PTPN4-201ENST00000263708 GSTO1P78417 241 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 FAM160A1Q05DH4 1040 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 CEP85LQ5SZL2 805 aa12.9□□□□□ -0.34
PTPN4-201ENST00000263708 RFC1P35251 1148 aaPredicted RBP12.9□□□□□ -0.34
PTPN4-201ENST00000263708 PDE1CQ14123 709 aaPredicted RBP12.9□□□□□ -0.34
PTPN4-201ENST00000263708 DACT3Q96B18 629 aaPredicted RBP12.9□□□□□ -0.34
PTPN4-201ENST00000263708 TFIP11Q9UBB9 837 aaKnown RBP12.9□□□□□ -0.34
PTPN4-201ENST00000263708 SP4Q02446 784 aa12.9□□□□□ -0.35
PTPN4-201ENST00000263708 IFIT1BQ5T764 474 aaKnown RBP12.9□□□□□ -0.35
PTPN4-201ENST00000263708 DUSP27Q5VZP5 1158 aa12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms