RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 HOXA10P31260 410 aaPredicted RBP20.87■□□□□ 0.93
CHCHD3-201ENST00000262570 MASTLQ96GX5 879 aa20.87■□□□□ 0.93
CHCHD3-201ENST00000262570 BICC1Q9H694 974 aaKnown RBP20.87■□□□□ 0.93
CHCHD3-201ENST00000262570 GOLGB1Q14789 3259 aaKnown RBP20.87■□□□□ 0.93
CHCHD3-201ENST00000262570 LAMB2P55268 1798 aa20.86■□□□□ 0.93
CHCHD3-201ENST00000262570 NPR1P16066 1061 aa20.86■□□□□ 0.93
CHCHD3-201ENST00000262570 RABL6Q3YEC7 729 aaPredicted RBP20.86■□□□□ 0.93
CHCHD3-201ENST00000262570 CCDC152Q4G0S7 254 aa20.86■□□□□ 0.93
CHCHD3-201ENST00000262570 LRRFIP2Q9Y608 721 aaKnown RBP20.86■□□□□ 0.93
CHCHD3-201ENST00000262570 GNAI2P04899 355 aa20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 STYK1Q6J9G0 422 aa20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 LMBR1LQ6UX01 489 aa20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 RPGRQ92834 1020 aaKnown RBP20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 CHMP4BQ9H444 224 aaKnown RBP20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 ZBTB40Q9NUA8 1239 aa20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 KIAA1551Q9HCM1 1747 aa20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 ANKRD44Q8N8A2 993 aa20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 ZNF622Q969S3 477 aaKnown RBP eCLIP20.85■□□□□ 0.937e-19■□□□□ 8.6
CHCHD3-201ENST00000262570 CCDC85AQ96PX6 553 aaPredicted RBP20.85■□□□□ 0.93
CHCHD3-201ENST00000262570 RBM17Q96I25 401 aaKnown RBP20.84■□□□□ 0.93
CHCHD3-201ENST00000262570 CRAMP1Q96RY5 1269 aa20.84■□□□□ 0.93
CHCHD3-201ENST00000262570 GREM2Q9H772 168 aa20.84■□□□□ 0.93
CHCHD3-201ENST00000262570 RTL9Q8NET4 1388 aa20.83■□□□□ 0.93
CHCHD3-201ENST00000262570 DDX46Q7L014 1031 aaKnown RBP20.83■□□□□ 0.92
CHCHD3-201ENST00000262570 CRBNQ96SW2 442 aa20.83■□□□□ 0.92
CHCHD3-201ENST00000262570 PIM2Q9P1W9 311 aa20.83■□□□□ 0.92
CHCHD3-201ENST00000262570 COL11A2P13942 1736 aaPredicted RBP20.83■□□□□ 0.92
CHCHD3-201ENST00000262570 ALDH1B1P30837 517 aa20.82■□□□□ 0.92
CHCHD3-201ENST00000262570 CNKSR1Q969H4 720 aa20.82■□□□□ 0.92
CHCHD3-201ENST00000262570 SEC31BQ9NQW1 1179 aa20.82■□□□□ 0.92
CHCHD3-201ENST00000262570 FAM161AQ3B820 660 aa20.81■□□□□ 0.92
CHCHD3-201ENST00000262570 TTLL6Q8N841 843 aa20.81■□□□□ 0.92
CHCHD3-201ENST00000262570 C1orf115Q9H7X2 142 aa20.81■□□□□ 0.92
CHCHD3-201ENST00000262570 ITGA6P23229 1130 aa20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 CHMP3Q9Y3E7 222 aa20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 MYH3P11055 1940 aa20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 MTX1Q13505 466 aa20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 GRAPQ13588 217 aa20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 GRAPLQ8TC17 118 aaPredicted RBP20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 CELF1Q92879 486 aaKnown RBP20.8■□□□□ 0.92
CHCHD3-201ENST00000262570 IFIT5Q13325 482 aaKnown RBP20.79■□□□□ 0.92
CHCHD3-201ENST00000262570 DLEC1Q9Y238 1755 aa20.79■□□□□ 0.92
CHCHD3-201ENST00000262570 ANKRD18BA2A2Z9 1011 aa20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 BBOX1O75936 387 aa20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 RPS8P62241 208 aaKnown RBP20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 IRX6P78412 446 aaPredicted RBP20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 CCDC57Q2TAC2 916 aa20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 DALRD3Q5D0E6 543 aaKnown RBP20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 PRPF40BQ6NWY9 871 aaKnown RBP20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 WWC3Q9ULE0 1092 aa20.78■□□□□ 0.92
CHCHD3-201ENST00000262570 CDC5LQ99459 802 aaKnown RBP20.77■□□□□ 0.92
CHCHD3-201ENST00000262570 EXOC6Q8TAG9 804 aa20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 SRGAP3O43295 1099 aa20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 RFX5P48382 616 aaPredicted RBP20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 ATP8B2P98198 1209 aa20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 CEP85Q6P2H3 762 aa20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 ANKRD18AQ8IVF6 992 aa20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 BCS1LQ9Y276 419 aa20.76■□□□□ 0.91
CHCHD3-201ENST00000262570 COL4A1P02462 1669 aa20.75■□□□□ 0.91
CHCHD3-201ENST00000262570 BRCA1P38398 1863 aaKnown RBP20.75■□□□□ 0.91
CHCHD3-201ENST00000262570 PNMA6EA0A0J9YXQ4 647 aa20.75■□□□□ 0.91
CHCHD3-201ENST00000262570 AAMPQ13685 434 aa20.75■□□□□ 0.91
CHCHD3-201ENST00000262570 C7orf43Q8WVR3 580 aa20.75■□□□□ 0.91
CHCHD3-201ENST00000262570 UTRNP46939 3433 aa20.74■□□□□ 0.91
CHCHD3-201ENST00000262570 PPEF1O14829 653 aaPredicted RBP20.74■□□□□ 0.91
CHCHD3-201ENST00000262570 TMC4Q7Z404 712 aa20.74■□□□□ 0.91
CHCHD3-201ENST00000262570 RPAP2Q8IXW5 612 aaPredicted RBP20.74■□□□□ 0.91
CHCHD3-201ENST00000262570 ZNF594Q96JF6 807 aaPredicted RBP20.74■□□□□ 0.91
CHCHD3-201ENST00000262570 BSDC1Q9NW68 430 aaPredicted RBP20.74■□□□□ 0.91
CHCHD3-201ENST00000262570 IGHMBP2P38935 993 aaKnown RBP20.73■□□□□ 0.91
CHCHD3-201ENST00000262570 PTPN12Q05209 780 aaKnown RBP20.73■□□□□ 0.91
CHCHD3-201ENST00000262570 SSH3Q8TE77 659 aa20.73■□□□□ 0.91
CHCHD3-201ENST00000262570 TAF1P21675 1872 aa20.73■□□□□ 0.91
CHCHD3-201ENST00000262570 SLX4Q8IY92 1834 aa20.73■□□□□ 0.91
CHCHD3-201ENST00000262570 POLA2Q14181 598 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 KLHDC4Q8TBB5 520 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 MPHOSPH8Q99549 860 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 ATP6V0A2Q9Y487 856 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 C21orf2O43822 256 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 TAF7LQ5H9L4 462 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 SIRT2Q8IXJ6 389 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 SP8Q8IXZ3 490 aa20.72■□□□□ 0.91
CHCHD3-201ENST00000262570 LDHAL6AQ6ZMR3 332 aa20.71■□□□□ 0.91
CHCHD3-201ENST00000262570 SLC51AQ86UW1 340 aa20.71■□□□□ 0.91
CHCHD3-201ENST00000262570 COPRSQ9NQ92 184 aa20.71■□□□□ 0.91
CHCHD3-201ENST00000262570 PCDHB15Q9Y5E8 787 aa20.71■□□□□ 0.91
CHCHD3-201ENST00000262570 YBX3P16989 372 aaKnown RBP eCLIP20.7■□□□□ 0.97e-7■■■■□ 21.9
CHCHD3-201ENST00000262570 OLFM4Q6UX06 510 aa20.7■□□□□ 0.9
CHCHD3-201ENST00000262570 ZNF219Q9P2Y4 722 aaPredicted RBP20.7■□□□□ 0.9
CHCHD3-201ENST00000262570 CC2D2BQ6DHV5 1058 aa20.69■□□□□ 0.9
CHCHD3-201ENST00000262570 PUS3Q9BZE2 481 aaKnown RBP20.69■□□□□ 0.9
CHCHD3-201ENST00000262570 MINPP1Q9UNW1 487 aa20.69■□□□□ 0.9
CHCHD3-201ENST00000262570 PA2G4Q9UQ80 394 aaKnown RBP20.69■□□□□ 0.9
CHCHD3-201ENST00000262570 SOGA3Q5TF21 947 aa20.68■□□□□ 0.9
CHCHD3-201ENST00000262570 PELP1Q8IZL8 1130 aaKnown RBP20.68■□□□□ 0.9
CHCHD3-201ENST00000262570 FBXO3Q9UK99 471 aa20.68■□□□□ 0.9
CHCHD3-201ENST00000262570 RIPOR2Q9Y4F9 1068 aa20.68■□□□□ 0.9
CHCHD3-201ENST00000262570 GPR162Q16538 588 aa20.68■□□□□ 0.9
CHCHD3-201ENST00000262570 LRRC24Q50LG9 513 aa20.68■□□□□ 0.9
CHCHD3-201ENST00000262570 TMX4Q9H1E5 349 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms