RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 ZPR1O75312 459 aa23.07■■□□□ 1.28
COL4A3BP-201ENST00000261415 POLA2Q14181 598 aa23.07■■□□□ 1.28
COL4A3BP-201ENST00000261415 ZBTB38Q8NAP3 1195 aaPredicted RBP23.07■■□□□ 1.28
COL4A3BP-201ENST00000261415 BCL2L12Q9HB09 334 aa23.07■■□□□ 1.28
COL4A3BP-201ENST00000261415 RFC4P35249 363 aa23.06■■□□□ 1.28
COL4A3BP-201ENST00000261415 NIP7Q9Y221 180 aaKnown RBP eCLIP23.06■■□□□ 1.28
COL4A3BP-201ENST00000261415 USP42Q9H9J4 1324 aaKnown RBP23.06■■□□□ 1.28
COL4A3BP-201ENST00000261415 SSFA2P28290 1259 aa23.06■■□□□ 1.28
COL4A3BP-201ENST00000261415 FAM89AQ96GI7 184 aa23.06■■□□□ 1.28
COL4A3BP-201ENST00000261415 EN1Q05925 392 aaPredicted RBP23.05■■□□□ 1.28
COL4A3BP-201ENST00000261415 RABL6Q3YEC7 729 aaPredicted RBP23.05■■□□□ 1.28
COL4A3BP-201ENST00000261415 PARP10Q53GL7 1025 aa23.05■■□□□ 1.28
COL4A3BP-201ENST00000261415 QSER1Q2KHR3 1735 aa23.04■■□□□ 1.28
COL4A3BP-201ENST00000261415 ZNF827Q17R98 1081 aa23.04■■□□□ 1.28
COL4A3BP-201ENST00000261415 CAMKK2Q96RR4 588 aa23.04■■□□□ 1.28
COL4A3BP-201ENST00000261415 TRMT112Q9UI30 125 aaKnown RBP23.04■■□□□ 1.28
COL4A3BP-201ENST00000261415 CDHR2Q9BYE9 1310 aa23.04■■□□□ 1.28
COL4A3BP-201ENST00000261415 DDX11L8A8MPP1 907 aa23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 NUCB1Q02818 461 aa23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 EZH2Q15910 746 aaKnown RBP23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 SUSD4Q5VX71 490 aa23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 AKT1S1Q96B36 256 aa23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 UPF2Q9HAU5 1272 aaKnown RBP23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 FOXO4P98177 505 aa23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 SF3B2Q13435 895 aaKnown RBP23.03■■□□□ 1.28
COL4A3BP-201ENST00000261415 EXOC6BQ9Y2D4 811 aa23.02■■□□□ 1.28
COL4A3BP-201ENST00000261415 ANKRD45Q5TZF3 282 aa23.02■■□□□ 1.28
COL4A3BP-201ENST00000261415 TBC1D9BQ66K14 1250 aa23.02■■□□□ 1.28
COL4A3BP-201ENST00000261415 SYNE4Q8N205 404 aa23.02■■□□□ 1.28
COL4A3BP-201ENST00000261415 ZSCAN30Q86W11 494 aa23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 CHMP5Q9NZZ3 219 aa23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 BAG6P46379 1132 aa23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 CHD1LQ86WJ1 897 aa23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 UTP14AQ9BVJ6 771 aaKnown RBP23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 PLA2G12BQ9BX93 195 aa23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 TFCP2L1Q9NZI6 479 aa23.01■■□□□ 1.27
COL4A3BP-201ENST00000261415 FAM177BA6PVY3 158 aa23■■□□□ 1.27
COL4A3BP-201ENST00000261415 LMBR1LQ6UX01 489 aa23■■□□□ 1.27
COL4A3BP-201ENST00000261415 SH3TC1Q8TE82 1336 aa23■■□□□ 1.27
COL4A3BP-201ENST00000261415 NTSR2O95665 410 aa22.99■■□□□ 1.27
COL4A3BP-201ENST00000261415 CCDC173Q0VFZ6 552 aa22.99■■□□□ 1.27
COL4A3BP-201ENST00000261415 LNPKQ9C0E8 428 aa22.99■■□□□ 1.27
COL4A3BP-201ENST00000261415 FAM13BQ9NYF5 915 aa22.99■■□□□ 1.27
COL4A3BP-201ENST00000261415 BICDL1Q6ZP65 573 aa22.99■■□□□ 1.27
COL4A3BP-201ENST00000261415 BBXQ8WY36 941 aaPredicted RBP22.99■■□□□ 1.27
COL4A3BP-201ENST00000261415 APBB1O00213 710 aa22.98■■□□□ 1.27
COL4A3BP-201ENST00000261415 IRS4O14654 1257 aaPredicted RBP22.98■■□□□ 1.27
COL4A3BP-201ENST00000261415 SURF6O75683 361 aaKnown RBP22.98■■□□□ 1.27
COL4A3BP-201ENST00000261415 TBC1D2Q9BYX2 928 aa22.98■■□□□ 1.27
COL4A3BP-201ENST00000261415 DEFB132Q7Z7B7 95 aa22.97■■□□□ 1.27
COL4A3BP-201ENST00000261415 DMTNQ08495 405 aa22.97■■□□□ 1.27
COL4A3BP-201ENST00000261415 SETDB2Q96T68 719 aa22.97■■□□□ 1.27
COL4A3BP-201ENST00000261415 PA2G4Q9UQ80 394 aaKnown RBP22.97■■□□□ 1.27
COL4A3BP-201ENST00000261415 CHMP3Q9Y3E7 222 aa22.97■■□□□ 1.27
COL4A3BP-201ENST00000261415 MSNP26038 577 aaKnown RBP22.96■■□□□ 1.27
COL4A3BP-201ENST00000261415 SPEF2Q9C093 1822 aa22.96■■□□□ 1.27
COL4A3BP-201ENST00000261415 GYS1P13807 737 aa22.96■■□□□ 1.27
COL4A3BP-201ENST00000261415 RFX5P48382 616 aaPredicted RBP22.96■■□□□ 1.27
COL4A3BP-201ENST00000261415 NUTM1Q86Y26 1132 aa22.95■■□□□ 1.26
COL4A3BP-201ENST00000261415 SMARCA5O60264 1052 aaPredicted RBP22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 PDE8AO60658 829 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 KLHDC4Q8TBB5 520 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 PPP1R9BQ96SB3 815 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 CSF1RP07333 972 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 CTSWP56202 376 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 HSP90AB4PQ58FF6 505 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 CCDC125Q86Z20 511 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 LRRCC1Q9C099 1032 aa22.94■■□□□ 1.26
COL4A3BP-201ENST00000261415 CARMIL3Q8ND23 1372 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 RAB11FIP3O75154 756 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 PTPN12Q05209 780 aaKnown RBP22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 COL23A1Q86Y22 540 aaPredicted RBP22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 FLAD1Q8NFF5 587 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 COPRSQ9NQ92 184 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 NFIXQ14938 502 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 ANP32BQ92688 251 aaKnown RBP22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 TBC1D32Q96NH3 1257 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 PNPLA7Q6ZV29 1317 aa22.93■■□□□ 1.26
COL4A3BP-201ENST00000261415 DYNC1I1O14576 645 aa22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 HCLS1P14317 486 aaPredicted RBP22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 PTMSP20962 102 aa22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 TTLL11Q8NHH1 800 aa22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 NYXQ9GZU5 481 aa22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 TAF1P21675 1872 aa22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 OS9Q13438 667 aaPredicted RBP22.92■■□□□ 1.26
COL4A3BP-201ENST00000261415 SEC24BO95487 1268 aa22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 SLC15A2Q16348 729 aa22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 ERFEQ4G0M1 354 aa22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 NBPF5PQ86XG9 351 aaPredicted RBP22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 CCDC85AQ96PX6 553 aaPredicted RBP22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 SIL1Q9H173 461 aa22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 TNRC6CQ9HCJ0 1690 aaKnown RBP22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 HSP90B1P14625 803 aaKnown RBP22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 RHPN1Q8TCX5 695 aa22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 ZHX1Q9UKY1 873 aaPredicted RBP22.91■■□□□ 1.26
COL4A3BP-201ENST00000261415 SKOR2Q2VWA4 1001 aaPredicted RBP22.9■■□□□ 1.26
COL4A3BP-201ENST00000261415 KIF1BPQ96EK5 621 aa22.9■■□□□ 1.26
COL4A3BP-201ENST00000261415 STK32BQ9NY57 414 aa22.9■■□□□ 1.26
COL4A3BP-201ENST00000261415 ABCC12Q96J65 1359 aa22.9■■□□□ 1.26
COL4A3BP-201ENST00000261415 GTF2E1P29083 439 aaPredicted RBP22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms