RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 GRIPAP1Q4V328 841 aa29.35■■■□□ 2.29
LSM4-201ENST00000252816 CDCA7LQ96GN5 454 aa29.35■■■□□ 2.29
LSM4-201ENST00000252816 SP8Q8IXZ3 490 aa29.34■■■□□ 2.29
LSM4-201ENST00000252816 DNAAF4Q8WXU2 420 aa29.34■■■□□ 2.29
LSM4-201ENST00000252816 CELF1Q92879 486 aaKnown RBP29.34■■■□□ 2.29
LSM4-201ENST00000252816 COL4A1P02462 1669 aa29.34■■■□□ 2.29
LSM4-201ENST00000252816 DPY19L2Q6NUT2 758 aa29.33■■■□□ 2.29
LSM4-201ENST00000252816 TMX4Q9H1E5 349 aaPredicted RBP29.32■■■□□ 2.28
LSM4-201ENST00000252816 COL4A5P29400 1685 aa29.31■■■□□ 2.28
LSM4-201ENST00000252816 CDHR2Q9BYE9 1310 aa29.31■■■□□ 2.28
LSM4-201ENST00000252816 F6X3S4 739 aa29.31■■■□□ 2.28
LSM4-201ENST00000252816 PDE8AO60658 829 aa29.31■■■□□ 2.28
LSM4-201ENST00000252816 TOMM70O94826 608 aa29.31■■■□□ 2.28
LSM4-201ENST00000252816 HSP90B1P14625 803 aaKnown RBP29.31■■■□□ 2.28
LSM4-201ENST00000252816 POTECB2RU33 542 aa29.3■■■□□ 2.28
LSM4-201ENST00000252816 DDNO94850 711 aaPredicted RBP29.3■■■□□ 2.28
LSM4-201ENST00000252816 ZNF541Q9H0D2 1346 aa29.29■■■□□ 2.28
LSM4-201ENST00000252816 GCKRQ14397 625 aa29.29■■■□□ 2.28
LSM4-201ENST00000252816 TMC4Q7Z404 712 aa29.29■■■□□ 2.28
LSM4-201ENST00000252816 TRMT2AQ8IZ69 625 aaKnown RBP29.29■■■□□ 2.28
LSM4-201ENST00000252816 SEC31BQ9NQW1 1179 aa29.29■■■□□ 2.28
LSM4-201ENST00000252816 H7C1W4 665 aa29.28■■■□□ 2.28
LSM4-201ENST00000252816 FZD9O00144 591 aa29.28■■■□□ 2.28
LSM4-201ENST00000252816 VEGFAP15692 232 aaPredicted RBP29.28■■■□□ 2.28
LSM4-201ENST00000252816 LINS1Q8NG48 757 aa29.28■■■□□ 2.28
LSM4-201ENST00000252816 CCDC85AQ96PX6 553 aaPredicted RBP29.28■■■□□ 2.28
LSM4-201ENST00000252816 RTFDC1Q9BY42 306 aaPredicted RBP29.28■■■□□ 2.28
LSM4-201ENST00000252816 WDR90Q96KV7 1748 aa29.28■■■□□ 2.28
LSM4-201ENST00000252816 CCDC152Q4G0S7 254 aa29.27■■■□□ 2.28
LSM4-201ENST00000252816 DPP8Q6V1X1 898 aaPredicted RBP29.27■■■□□ 2.28
LSM4-201ENST00000252816 UBE3BQ7Z3V4 1068 aa29.27■■■□□ 2.28
LSM4-201ENST00000252816 C16orf71Q8IYS4 520 aaPredicted RBP29.27■■■□□ 2.28
LSM4-201ENST00000252816 MPNDQ8N594 471 aa29.27■■■□□ 2.28
LSM4-201ENST00000252816 RPS8P62241 208 aaKnown RBP29.26■■■□□ 2.27
LSM4-201ENST00000252816 LARGE2Q8N3Y3 721 aa29.26■■■□□ 2.27
LSM4-201ENST00000252816 JDP2Q8WYK2 163 aa29.26■■■□□ 2.27
LSM4-201ENST00000252816 LRRC37AA6NMS7 1700 aa29.25■■■□□ 2.27
LSM4-201ENST00000252816 CASP7P55210 303 aa29.25■■■□□ 2.27
LSM4-201ENST00000252816 CTSWP56202 376 aa29.25■■■□□ 2.27
LSM4-201ENST00000252816 RBM46Q8TBY0 533 aaKnown RBP29.25■■■□□ 2.27
LSM4-201ENST00000252816 PPIP5K2O43314 1243 aa29.24■■■□□ 2.27
LSM4-201ENST00000252816 AOC3Q16853 763 aa29.24■■■□□ 2.27
LSM4-201ENST00000252816 BEND3Q5T5X7 828 aa29.24■■■□□ 2.27
LSM4-201ENST00000252816 MRPL50Q8N5N7 158 aaKnown RBP29.24■■■□□ 2.27
LSM4-201ENST00000252816 SUPT20HQ8NEM7 779 aa29.23■■■□□ 2.27
LSM4-201ENST00000252816 TTLL11Q8NHH1 800 aa29.23■■■□□ 2.27
LSM4-201ENST00000252816 DUOX1Q9NRD9 1551 aa29.22■■■□□ 2.27
LSM4-201ENST00000252816 SSH1Q8WYL5 1049 aa29.22■■■□□ 2.27
LSM4-201ENST00000252816 L3MBTL3Q96JM7 780 aaPredicted RBP29.21■■■□□ 2.27
LSM4-201ENST00000252816 VPS33BQ9H267 617 aa29.21■■■□□ 2.27
LSM4-201ENST00000252816 GPSM2P81274 684 aa29.2■■■□□ 2.26
LSM4-201ENST00000252816 NIM1KQ8IY84 436 aa29.2■■■□□ 2.26
LSM4-201ENST00000252816 PLA2G12BQ9BX93 195 aa29.2■■■□□ 2.26
LSM4-201ENST00000252816 GREM2Q9H772 168 aa29.2■■■□□ 2.26
LSM4-201ENST00000252816 NSFL1CQ9UNZ2 370 aaKnown RBP29.2■■■□□ 2.26
LSM4-201ENST00000252816 HSPA6P17066 643 aa29.19■■■□□ 2.26
LSM4-201ENST00000252816 EIF6P56537 245 aaKnown RBP29.18■■■□□ 2.26
LSM4-201ENST00000252816 KIAA2012Q0VF49 1180 aa29.18■■■□□ 2.26
LSM4-201ENST00000252816 BCL2L13Q9BXK5 485 aa29.18■■■□□ 2.26
LSM4-201ENST00000252816 CEP350Q5VT06 3117 aa29.18■■■□□ 2.26
LSM4-201ENST00000252816 RTL9Q8NET4 1388 aa29.17■■■□□ 2.26
LSM4-201ENST00000252816 SLC4A10Q6U841 1118 aa29.17■■■□□ 2.26
LSM4-201ENST00000252816 GPC2Q8N158 579 aa29.17■■■□□ 2.26
LSM4-201ENST00000252816 POLLQ9UGP5 575 aa29.17■■■□□ 2.26
LSM4-201ENST00000252816 MYH3P11055 1940 aa29.17■■■□□ 2.26
LSM4-201ENST00000252816 FSTL1Q12841 308 aa29.16■■■□□ 2.26
LSM4-201ENST00000252816 ANKRD18AQ8IVF6 992 aa29.16■■■□□ 2.26
LSM4-201ENST00000252816 LTBP1Q14766 1721 aa29.16■■■□□ 2.26
LSM4-201ENST00000252816 ALDH1L2Q3SY69 923 aa29.14■■■□□ 2.26
LSM4-201ENST00000252816 SMC1BQ8NDV3 1235 aa29.14■■■□□ 2.26
LSM4-201ENST00000252816 CDC5LQ99459 802 aaKnown RBP29.14■■■□□ 2.26
LSM4-201ENST00000252816 ZNRF3Q9ULT6 936 aa29.14■■■□□ 2.26
LSM4-201ENST00000252816 GJA3Q9Y6H8 435 aa29.14■■■□□ 2.26
LSM4-201ENST00000252816 IQCA1LA6NCM1 817 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 C6orf229H3BNL8 230 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 ALDH1L1O75891 902 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 CSF1RP07333 972 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 TBC1D16Q8TBP0 767 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 SRCIN1Q9C0H9 1055 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 TAF1DQ9H5J8 278 aaPredicted RBP29.13■■■□□ 2.25
LSM4-201ENST00000252816 PODXL2Q9NZ53 605 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 PTPRCP08575 1304 aa29.13■■■□□ 2.25
LSM4-201ENST00000252816 GRM8O00222 908 aa29.12■■■□□ 2.25
LSM4-201ENST00000252816 POTEIP0CG38 1075 aa29.12■■■□□ 2.25
LSM4-201ENST00000252816 POTEJP0CG39 1038 aa29.12■■■□□ 2.25
LSM4-201ENST00000252816 FAM161AQ3B820 660 aa29.12■■■□□ 2.25
LSM4-201ENST00000252816 GPR101Q96P66 508 aaPredicted RBP29.12■■■□□ 2.25
LSM4-201ENST00000252816 SCN4AP35499 1836 aa29.11■■■□□ 2.25
LSM4-201ENST00000252816 CT47B1P0C2W7 299 aaPredicted RBP29.11■■■□□ 2.25
LSM4-201ENST00000252816 FOXO4P98177 505 aa29.11■■■□□ 2.25
LSM4-201ENST00000252816 CXCL9Q07325 125 aa29.11■■■□□ 2.25
LSM4-201ENST00000252816 WASHC4Q2M389 1173 aa29.11■■■□□ 2.25
LSM4-201ENST00000252816 SMC4Q9NTJ3 1288 aa29.11■■■□□ 2.25
LSM4-201ENST00000252816 RIMBP2O15034 1052 aa29.1■■■□□ 2.25
LSM4-201ENST00000252816 ITGA6P23229 1130 aa29.1■■■□□ 2.25
LSM4-201ENST00000252816 ANKIB1Q9P2G1 1089 aa29.1■■■□□ 2.25
LSM4-201ENST00000252816 HACL1Q9UJ83 578 aa29.1■■■□□ 2.25
LSM4-201ENST00000252816 YDJCA8MPS7 323 aa29.09■■■□□ 2.25
LSM4-201ENST00000252816 HNRNPUQ00839 825 aaKnown RBP eCLIP29.09■■■□□ 2.25
LSM4-201ENST00000252816 EPHA10Q5JZY3 1008 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms