RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 KCNJ4P48050 445 aa19.38■□□□□ 0.69
UBE3D-201ENST00000237186 DBNDD2Q9BQY9 259 aa19.38■□□□□ 0.69
UBE3D-201ENST00000237186 SMC3Q9UQE7 1217 aa19.38■□□□□ 0.69
UBE3D-201ENST00000237186 ZSCAN22P10073 491 aaPredicted RBP19.37■□□□□ 0.69
UBE3D-201ENST00000237186 PDIA4P13667 645 aaKnown RBP19.37■□□□□ 0.69
UBE3D-201ENST00000237186 STX6O43752 255 aa19.37■□□□□ 0.69
UBE3D-201ENST00000237186 SYT1P21579 422 aa19.37■□□□□ 0.69
UBE3D-201ENST00000237186 ZNF589Q86UQ0 364 aaPredicted RBP19.37■□□□□ 0.69
UBE3D-201ENST00000237186 TMEM63CQ9P1W3 806 aa19.37■□□□□ 0.69
UBE3D-201ENST00000237186 CIAO1O76071 339 aa19.36■□□□□ 0.69
UBE3D-201ENST00000237186 LARGE1O95461 756 aa19.36■□□□□ 0.69
UBE3D-201ENST00000237186 NASPP49321 788 aaPredicted RBP19.36■□□□□ 0.69
UBE3D-201ENST00000237186 ANKRD1Q15327 319 aa19.36■□□□□ 0.69
UBE3D-201ENST00000237186 TMOD3Q9NYL9 352 aa19.36■□□□□ 0.69
UBE3D-201ENST00000237186 AFDNP55196 1824 aaKnown RBP19.35■□□□□ 0.69
UBE3D-201ENST00000237186 EDC3Q96F86 508 aaKnown RBP19.35■□□□□ 0.69
UBE3D-201ENST00000237186 PPP1R9BQ96SB3 815 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 ZBTB3Q9H5J0 574 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 NSFL1CQ9UNZ2 370 aaKnown RBP19.35■□□□□ 0.69
UBE3D-201ENST00000237186 SHANK3Q9BYB0 1731 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 EYA2O00167 538 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 TCIRG1Q13488 830 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 ME3Q16798 604 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 KBTBD3Q8NAB2 608 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 FBXO3Q9UK99 471 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 NUP188Q5SRE5 1749 aa19.35■□□□□ 0.69
UBE3D-201ENST00000237186 RPS6KB1P23443 525 aa19.34■□□□□ 0.69
UBE3D-201ENST00000237186 KRT32Q14532 448 aa19.34■□□□□ 0.69
UBE3D-201ENST00000237186 BLOC1S2Q6QNY1 142 aa19.34■□□□□ 0.69
UBE3D-201ENST00000237186 LRSAM1Q6UWE0 723 aa19.34■□□□□ 0.69
UBE3D-201ENST00000237186 LARP6Q9BRS8 491 aaKnown RBP19.34■□□□□ 0.69
UBE3D-201ENST00000237186 RRAGDQ9NQL2 400 aaPredicted RBP19.34■□□□□ 0.69
UBE3D-201ENST00000237186 RBM27Q9P2N5 1060 aaKnown RBP19.34■□□□□ 0.69
UBE3D-201ENST00000237186 ATP6V1DQ9Y5K8 247 aa19.34■□□□□ 0.69
UBE3D-201ENST00000237186 CCDC173Q0VFZ6 552 aa19.33■□□□□ 0.69
UBE3D-201ENST00000237186 ST3GAL1Q11201 340 aa19.33■□□□□ 0.69
UBE3D-201ENST00000237186 MCMDC2Q4G0Z9 681 aa19.33■□□□□ 0.69
UBE3D-201ENST00000237186 CCDC83Q8IWF9 413 aa19.33■□□□□ 0.69
UBE3D-201ENST00000237186 BTG4Q9NY30 223 aa19.33■□□□□ 0.69
UBE3D-201ENST00000237186 F13A1P00488 732 aa19.33■□□□□ 0.68
UBE3D-201ENST00000237186 PRIM1P49642 420 aaKnown RBP19.33■□□□□ 0.68
UBE3D-201ENST00000237186 USP48Q86UV5 1035 aa19.33■□□□□ 0.68
UBE3D-201ENST00000237186 PIGBQ92521 554 aa19.33■□□□□ 0.68
UBE3D-201ENST00000237186 PLA2G12BQ9BX93 195 aa19.33■□□□□ 0.68
UBE3D-201ENST00000237186 TPCN1Q9ULQ1 816 aa19.33■□□□□ 0.68
UBE3D-201ENST00000237186 CHMP3Q9Y3E7 222 aa19.33■□□□□ 0.68
UBE3D-201ENST00000237186 PALLDQ8WX93 1383 aa19.32■□□□□ 0.68
UBE3D-201ENST00000237186 COL22A1Q8NFW1 1626 aaPredicted RBP19.32■□□□□ 0.68
UBE3D-201ENST00000237186 GJB2P29033 226 aa19.32■□□□□ 0.68
UBE3D-201ENST00000237186 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.32■□□□□ 0.68
UBE3D-201ENST00000237186 U3KPZ7 1027 aaPredicted RBP19.32■□□□□ 0.68
UBE3D-201ENST00000237186 SH3TC1Q8TE82 1336 aa19.32■□□□□ 0.68
UBE3D-201ENST00000237186 SYAP1Q96A49 352 aaPredicted RBP19.31■□□□□ 0.68
UBE3D-201ENST00000237186 MTMR6Q9Y217 621 aa19.31■□□□□ 0.68
UBE3D-201ENST00000237186 TJP1Q07157 1748 aa19.31■□□□□ 0.68
UBE3D-201ENST00000237186 ZNF609O15014 1411 aa19.31■□□□□ 0.68
UBE3D-201ENST00000237186 STARD3NLO95772 234 aa19.31■□□□□ 0.68
UBE3D-201ENST00000237186 DNAJC2Q99543 621 aaKnown RBP19.31■□□□□ 0.68
UBE3D-201ENST00000237186 HELLSQ9NRZ9 838 aa19.31■□□□□ 0.68
UBE3D-201ENST00000237186 DISP2A7MBM2 1401 aa19.3■□□□□ 0.68
UBE3D-201ENST00000237186 PCCAP05165 728 aaPredicted RBP19.3■□□□□ 0.68
UBE3D-201ENST00000237186 KLHL34Q8N239 644 aa19.3■□□□□ 0.68
UBE3D-201ENST00000237186 ANP32BQ92688 251 aaKnown RBP19.3■□□□□ 0.68
UBE3D-201ENST00000237186 RBSNQ9H1K0 784 aa19.3■□□□□ 0.68
UBE3D-201ENST00000237186 ASAP1Q9ULH1 1129 aa19.3■□□□□ 0.68
UBE3D-201ENST00000237186 TAF6LQ9Y6J9 622 aa19.3■□□□□ 0.68
UBE3D-201ENST00000237186 CSF1RP07333 972 aa19.29■□□□□ 0.68
UBE3D-201ENST00000237186 TOB2Q14106 344 aaPredicted RBP19.29■□□□□ 0.68
UBE3D-201ENST00000237186 LRRC24Q50LG9 513 aa19.29■□□□□ 0.68
UBE3D-201ENST00000237186 DNAJC10Q8IXB1 793 aa19.29■□□□□ 0.68
UBE3D-201ENST00000237186 COL14A1Q05707 1796 aaKnown RBP19.29■□□□□ 0.68
UBE3D-201ENST00000237186 TOGARAM1Q9Y4F4 1720 aa19.29■□□□□ 0.68
UBE3D-201ENST00000237186 GADD45BO75293 160 aaPredicted RBP19.28■□□□□ 0.68
UBE3D-201ENST00000237186 TIMM10P62072 90 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 COL9A3Q14050 684 aaPredicted RBP19.28■□□□□ 0.68
UBE3D-201ENST00000237186 DDX46Q7L014 1031 aaKnown RBP19.28■□□□□ 0.68
UBE3D-201ENST00000237186 NEUROD6Q96NK8 337 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 PAG1Q9NWQ8 432 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 SYCE3A1L190 88 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 TOM1O60784 492 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 CLCN1P35523 988 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 KIF6Q6ZMV9 814 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 NDUFB9Q9Y6M9 179 aa19.28■□□□□ 0.68
UBE3D-201ENST00000237186 CCDC57Q2TAC2 916 aa19.27■□□□□ 0.68
UBE3D-201ENST00000237186 NECAB1Q8N987 351 aa19.27■□□□□ 0.68
UBE3D-201ENST00000237186 ZBTB38Q8NAP3 1195 aaPredicted RBP19.27■□□□□ 0.68
UBE3D-201ENST00000237186 NEK1Q96PY6 1258 aa19.27■□□□□ 0.68
UBE3D-201ENST00000237186 DSCC1Q9BVC3 393 aa19.27■□□□□ 0.68
UBE3D-201ENST00000237186 PHLPP1O60346 1717 aa19.27■□□□□ 0.68
UBE3D-201ENST00000237186 COL16A1Q07092 1604 aaPredicted RBP19.27■□□□□ 0.67
UBE3D-201ENST00000237186 A0A1B0GUL7 405 aa19.26■□□□□ 0.67
UBE3D-201ENST00000237186 PDCP20941 246 aa19.26■□□□□ 0.67
UBE3D-201ENST00000237186 PIP4K2BP78356 416 aa19.26■□□□□ 0.67
UBE3D-201ENST00000237186 ZMYM1Q5SVZ6 1142 aa19.26■□□□□ 0.67
UBE3D-201ENST00000237186 GIGYF2Q6Y7W6 1299 aaKnown RBP19.26■□□□□ 0.67
UBE3D-201ENST00000237186 TRIM44Q96DX7 344 aaPredicted RBP19.26■□□□□ 0.67
UBE3D-201ENST00000237186 ZNF594Q96JF6 807 aaPredicted RBP19.26■□□□□ 0.67
UBE3D-201ENST00000237186 SEC62Q99442 399 aaKnown RBP19.26■□□□□ 0.67
UBE3D-201ENST00000237186 GDPD2Q9HCC8 539 aa19.26■□□□□ 0.67
UBE3D-201ENST00000237186 CEP126Q9P2H0 1117 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms