RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 GARNL3Q5VVW2 1013 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TMEM215Q68D42 235 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 VITQ6UXI7 678 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF836Q6ZNA1 936 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 WDR53Q7Z5U6 358 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GRASPQ7Z6J2 395 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR52E1Q8NGJ3 308 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR8D4Q8NGM9 314 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PIGKQ92643 395 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CDS1Q92903 461 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SMARCD2Q92925 531 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 UPRTQ96BW1 309 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TEX101Q9BY14 249 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RNF32Q9H0A6 362 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TMEM168Q9H0V1 697 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 WNT5BQ9H1J7 359 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 XKR8Q9H6D3 395 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KIR3DX1Q9H7L2 352 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TCF7L1Q9HCS4 588 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 NRIP3Q9NQ35 241 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 DUSP22Q9NRW4 184 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TAS2R8Q9NYW2 309 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GLTPQ9NZD2 209 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF224Q9NZL3 707 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KCNK6Q9Y257 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ATG4BQ9Y4P1 393 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FKBP7Q9Y680 259 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 A0A0A6YYJ9 748 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CDHR4A6H8M9 788 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 LINC00862A6NCI5 91 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 L7N2F9 121 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CTDSPLO15194 276 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 FRS3O43559 492 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 GSTZ1O43708 216 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 AGFG2O95081 481 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 DCNP07585 359 aaKnown RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 IFI6P09912 130 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 UCHL1P09936 223 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SBK2P0C263 348 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CPMP14384 443 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 NID1P14543 1247 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 EPCAMP16422 314 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SHC1P29353 583 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SOX18P35713 384 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 PDX1P52945 283 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 RAP2BP61225 183 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CST6Q15828 149 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SLC35D3Q5M8T2 416 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 DCST2Q5T1A1 773 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 KCTD20Q7Z5Y7 419 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 UBE3DQ7Z6J8 389 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 COMMD7Q86VX2 200 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 NKAIN4Q8IVV8 208 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SLC35F2Q8IXU6 374 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 GPR135Q8IZ08 494 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 LMNTD1Q8N9Z9 388 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 C1orf216Q8TAB5 229 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 NT5CQ8TCD5 201 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 TMEM255BQ8WV15 326 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CCDC107Q8WV48 283 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 ASB13Q8WXK3 278 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SGTBQ96EQ0 304 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CNRIP1Q96F85 164 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 AHCYL2Q96HN2 611 aaKnown RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 C4orf36Q96KX1 117 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CCNL2Q96S94 520 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 PRR14Q9BWN1 585 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 COMMD4Q9H0A8 199 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 LYRM4Q9HD34 91 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 B3GAT2Q9NPZ5 323 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 HAO2Q9NYQ3 351 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 NKIRAS2Q9NYR9 191 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 GLS2Q9UI32 602 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 SLC6A5Q9Y345 797 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 ETV7Q9Y603 341 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 A0A087WV62 115 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 TRBV2A0A0J9YWF9 115 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 ACOT7O00154 380 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 TM4SF5O14894 197 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CHP2O43745 196 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CREBL2O60519 120 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 DNAJB6O75190 326 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 OR7A10O76100 309 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 LDOC1O95751 146 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CD1AP06126 327 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CEBPBP17676 345 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 GIFP27352 417 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CCR2P41597 374 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 CCR9P51686 369 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 EPHA4P54764 986 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 TSPAN5P62079 268 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 RTP5Q14D33 572 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 IRF4Q15306 451 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 PLA1AQ53H76 456 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 FCRLBQ6BAA4 426 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 HEPHL1Q6MZM0 1159 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 IGF2-ASQ6U949 168 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 FAM198BQ6UWH4 519 aa3.67□□□□□ -1.82
SCN1A-214ENST00000637038 LYPD4Q6UWN0 246 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms