RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OR1Q1Q15612 314 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 NRF1Q16656 503 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 C6orf89Q6UWU4 347 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 ZNF610Q8N9Z0 462 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 PIGXQ8TBF5 258 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 SLC47A1Q96FL8 570 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 TAPBPLQ9BX59 468 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 BCO1Q9HAY6 547 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 TAGLN3Q9UI15 199 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 SLC9A8Q9Y2E8 581 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 TUBAL3A6NHL2 446 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 M0R3H8 397 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 IMPDH2P12268 514 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 FPR1P21462 350 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 KDELR2P33947 212 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 PSME3P61289 254 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 PDK3Q15120 406 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 C1orf140Q5VVS0 124 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 C5orf46Q6UWT4 87 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 CCDC197Q8NCU1 140 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 RNF217Q8TC41 542 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 MCHR1Q99705 422 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 PSD2Q9BQI7 771 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 PRR14Q9BWN1 585 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 ALG2Q9H553 416 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 EMC3Q9P0I2 261 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 DCHS2Q6V1P9 2916 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 ABCA12Q86UK0 2595 aa18.45■□□□□ 0.54
CLN3-240ENST00000631023 ZNF724A8MTY0 619 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 TMEM229AB2RXF0 380 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 NME4O00746 187 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 GSTA4O15217 222 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 SSTR2P30874 369 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 CD79BP40259 229 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 CRYBA2P53672 197 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 H3F3AP84243 136 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 CEACAM7Q14002 265 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 ZNF474Q6S9Z5 364 aaPredicted RBP18.44■□□□□ 0.54
CLN3-240ENST00000631023 PAQR6Q6TCH4 344 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 OR6T1Q8NGN1 323 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 SLC38A4Q969I6 547 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 C14orf79Q96F83 325 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 WFDC6Q9BQY6 131 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 C12orf49Q9H741 205 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 SPAG4Q9NPE6 437 aa18.44■□□□□ 0.54
CLN3-240ENST00000631023 ABCA4P78363 2273 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 LIPT2A6NK58 231 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 GPR171O14626 319 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 TPST2O60704 377 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 AHSA1O95433 338 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 POU2F1P14859 743 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 MNAT1P51948 309 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 SNTB1Q13884 538 aaKnown RBP18.43■□□□□ 0.54
CLN3-240ENST00000631023 OR7A5Q15622 319 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 LRRC23Q53EV4 343 aaPredicted RBP18.43■□□□□ 0.54
CLN3-240ENST00000631023 SWT1Q5T5J6 900 aaKnown RBP18.43■□□□□ 0.54
CLN3-240ENST00000631023 ZNF613Q6PF04 617 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 BEND4Q6ZU67 534 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 VANGL1Q8TAA9 524 aaPredicted RBP18.43■□□□□ 0.54
CLN3-240ENST00000631023 ABCD2Q9UBJ2 740 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 SH3GLB1Q9Y371 365 aa18.43■□□□□ 0.54
CLN3-240ENST00000631023 A0A0B4J2E0 115 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 A0A1B0GX12 115 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 NPIPB7O75200 414 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 KLK2P20151 261 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 GSK3BP49841 420 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 CYBRD1Q53TN4 286 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 ABLIM2Q6H8Q1 611 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 GALNT5Q7Z7M9 940 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 ZNF295-AS1Q8N0V1 137 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 FAM222BQ8WU58 562 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 LZICQ8WZA0 190 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 KCTD14Q9BQ13 255 aaPredicted RBP18.42■□□□□ 0.54
CLN3-240ENST00000631023 ARL8BQ9NVJ2 186 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 ADPRHL2Q9NX46 363 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 ADA2Q9NZK5 511 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 NDRG3Q9UGV2 375 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 ING1Q9UK53 422 aaPredicted RBP18.42■□□□□ 0.54
CLN3-240ENST00000631023 IGKV3D-15A0A087WSY6 115 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 A0A087WUJ7 227 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 OR2T1O43869 369 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 SLC16A1P53985 500 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 FAM27E3Q08E93 113 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 KRT72Q14CN4 511 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 EXOC3L2Q2M3D2 409 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 ENTPD8Q5MY95 495 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 NUFIP2Q7Z417 695 aaKnown RBP18.42■□□□□ 0.54
CLN3-240ENST00000631023 CCDC103Q8IW40 242 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 MFSD8Q8NHS3 518 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 NDE1Q9NXR1 346 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 CRIM1Q9NZV1 1036 aa18.42■□□□□ 0.54
CLN3-240ENST00000631023 C16orf97H3BN30 126 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 CXCR6O00574 342 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 PRF1P14222 555 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 RPS5P46782 204 aaKnown RBP18.41■□□□□ 0.54
CLN3-240ENST00000631023 CDH12P55289 794 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 SELENOWP63302 87 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 EGR4Q05215 589 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 OTUD3Q5T2D3 398 aaPredicted RBP18.41■□□□□ 0.54
CLN3-240ENST00000631023 CARM1Q86X55 608 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms