RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 PDK3Q15120 406 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 OR7A5Q15622 319 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 TRMT5Q32P41 509 aaKnown RBP12.59□□□□□ -0.39
PNKP-223ENST00000629179 MMEL1Q495T6 779 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 SFRP5Q5T4F7 317 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 NANOGP8Q6NSW7 305 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 ATG4DQ86TL0 474 aaPredicted RBP12.59□□□□□ -0.39
PNKP-223ENST00000629179 SNX32Q86XE0 403 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 ARMC8Q8IUR7 673 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 ZNF100Q8IYN0 542 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 C10orf82Q8WW14 230 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 SLC35B4Q969S0 331 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 WFDC6Q9BQY6 131 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 NAA11Q9BSU3 229 aaPredicted RBP12.59□□□□□ -0.39
PNKP-223ENST00000629179 PIF1Q9H611 641 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 KAT8Q9H7Z6 458 aaKnown RBP12.59□□□□□ -0.39
PNKP-223ENST00000629179 NANOGQ9H9S0 305 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 CCM2LQ9NUG4 571 aaPredicted RBP12.59□□□□□ -0.39
PNKP-223ENST00000629179 EMC3Q9P0I2 261 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 RPS6KB2Q9UBS0 482 aa12.59□□□□□ -0.39
PNKP-223ENST00000629179 NOSIPQ9Y314 301 aaKnown RBP12.59□□□□□ -0.39
PNKP-223ENST00000629179 PRORSD1PA6NEY8 169 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 TMEM229AB2RXF0 380 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 M0QX08 132 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 MRASO14807 208 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 EIF1BO60739 113 aaKnown RBP12.58□□□□□ -0.4
PNKP-223ENST00000629179 MFN2O95140 757 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 AKR7A3O95154 331 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 OPN1SWP03999 348 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 GPIP06744 558 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 PPP3CBP16298 524 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 GZMMP51124 257 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 SLC16A1P53985 500 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 PCBP3P57721 371 aaKnown RBP12.58□□□□□ -0.4
PNKP-223ENST00000629179 RBBP4Q09028 425 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 CYLC2Q14093 348 aaPredicted RBP12.58□□□□□ -0.4
PNKP-223ENST00000629179 TESK1Q15569 626 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 RABL3Q5HYI8 236 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 OTUD3Q5T2D3 398 aaPredicted RBP12.58□□□□□ -0.4
PNKP-223ENST00000629179 C1orf140Q5VVS0 124 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 REP15Q6BDI9 236 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 NET1Q7Z628 596 aaPredicted RBP12.58□□□□□ -0.4
PNKP-223ENST00000629179 WFDC8Q8IUA0 241 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 TMEM99Q8N816 258 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 SMYD1Q8NB12 490 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 STEAP2Q8NFT2 490 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 S100PBPQ96BU1 408 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 LRRC58Q96CX6 371 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 HDHD5Q9BXW7 423 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 MRGBPQ9NV56 204 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 ADPRHL2Q9NX46 363 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 ARMCX1Q9P291 453 aa12.58□□□□□ -0.4
PNKP-223ENST00000629179 PLCE1Q9P212 2302 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 RAI1Q7Z5J4 1906 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 A0A1B0GWA3 101 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 ELOA3DA6NLF2 546 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 FXYD1O00168 92 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 GPR171O14626 319 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 KLF4O43474 513 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 NPIPB7O75200 414 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 IGHV3-9P01782 118 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 IL32P24001 234 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 DNASE1P24855 282 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 LOXP28300 417 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 ADSLP30566 484 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 ART1P52961 327 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 RGS8P57771 180 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 ITGADQ13349 1161 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 P2RY6Q15077 328 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 MAPRE2Q15555 327 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 ELOA3BQ3SY89 546 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 ALKBH2Q6NS38 261 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 PAQR6Q6TCH4 344 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 PAMR1Q6UXH9 720 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 Q6ZT83 130 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 BHLHE22Q8NFJ8 381 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 ELOA3Q8NG57 546 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 OR52E4Q8NGH9 312 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 STK35Q8TDR2 534 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 KISS1RQ969F8 398 aaPredicted RBP12.57□□□□□ -0.4
PNKP-223ENST00000629179 HS3ST6Q96QI5 342 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 TAPBPLQ9BX59 468 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 TRIM2Q9C040 744 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 OR10A4Q9H209 315 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 FLVCR1Q9Y5Y0 555 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 CAPN7Q9Y6W3 813 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 USF3Q68DE3 2245 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 ACANP16112 2415 aa12.57□□□□□ -0.4
PNKP-223ENST00000629179 BBIP1A8MTZ0 92 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 TPST2O60704 377 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 MRPL33O75394 65 aaKnown RBP12.56□□□□□ -0.4
PNKP-223ENST00000629179 LYZL6O75951 148 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 IGHV1-2P23083 117 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 PCGF2P35227 344 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 RPS5P46782 204 aaKnown RBP12.56□□□□□ -0.4
PNKP-223ENST00000629179 EGR4Q05215 589 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 SLC17A1Q14916 467 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 OR1Q1Q15612 314 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 DUSP7Q16829 419 aa12.56□□□□□ -0.4
PNKP-223ENST00000629179 COQ5Q5HYK3 327 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms