RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 AKAP13Q12802 2813 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 C11orf98E9PRG8 122 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 FLRT2O43155 660 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 FADS1O60427 444 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 LALBAP00709 142 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 PLGP00747 810 aaPredicted RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 CDK4P11802 303 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 TCN2P20062 427 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 TGM4P49221 684 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 PNLIPRP2P54317 469 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 CTBP2P56545 445 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 DCAF7P61962 342 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 TOMM20Q15388 145 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 SPHARQ15513 63 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 IL20RBQ6UXL0 311 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 SLC46A3Q7Z3Q1 461 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 MRGPREQ86SM8 312 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 CMIPQ8IY22 773 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 FAM98AQ8NCA5 519 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 TOR1AIP2Q8NFQ8 470 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 BRIX1Q8TDN6 353 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 GPR119Q8TDV5 335 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 TM9SF4Q92544 642 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 HSPBAP1Q96EW2 488 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 TRMT61AQ96FX7 289 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 FOXN4Q96NZ1 517 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 OPALINQ96PE5 141 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 SECISBP2Q96T21 854 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 ISG20L2Q9H9L3 353 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 EXOSC4Q9NPD3 245 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 CNOT2Q9NZN8 540 aaKnown RBP7.09□□□□□ -1.27
NEK3-207ENST00000617054 MYOTQ9UBF9 498 aa7.09□□□□□ -1.27
NEK3-207ENST00000617054 ALG1L2C9J202 215 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 RCBTB2O95199 551 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 IL11P20809 199 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 OTX2P32243 289 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 GNALP38405 381 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 SLC1A3P43003 542 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 ITGADQ13349 1161 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 NCF4Q15080 339 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 C3orf38Q5JPI3 329 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 TMEM205Q6UW68 189 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 RTL4Q6ZR62 310 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 SNX29P2Q8IUI4 249 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 LNX2Q8N448 690 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 RFLNBQ8N5W9 214 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 NANOGP1Q8N7R0 232 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 DNAJA4Q8WW22 397 aaPredicted RBP7.09□□□□□ -1.28
NEK3-207ENST00000617054 VMP1Q96GC9 406 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 KATNB1Q9BVA0 655 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 DEFB126Q9BYW3 111 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 TMEM185BQ9H7F4 350 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 ZNF160Q9HCG1 818 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 NANSQ9NR45 359 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 TOR4AQ9NXH8 423 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 KLRF1Q9NZS2 232 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 FOXJ2Q9P0K8 574 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 PCDHGA3Q9Y5H0 932 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 HS3ST3B1Q9Y662 390 aa7.09□□□□□ -1.28
NEK3-207ENST00000617054 KDM4EB2RXH2 506 aaPredicted RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 M0R3G1 203 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 PSMD9O00233 223 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 ADAM10O14672 748 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 MYL12BO14950 172 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 TO15178 435 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 HCN1O60741 890 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 PPM1BO75688 479 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 GABARAPO95166 117 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 RAB36O95755 333 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 JMJD7P0C870 316 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 AHCYP23526 432 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 CXCR1P25024 350 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 PCOLCEQ15113 449 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 QPRTQ15274 297 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 ANKDD1AQ495B1 522 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 DCAF12Q5T6F0 453 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 CYP4Z2PQ8N1L4 340 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 TMEM99Q8N816 258 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 ZMYND19Q96E35 227 aaPredicted RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 Q96M85 177 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 TM9SF2Q99805 663 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 RACGAP1Q9H0H5 632 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 GPN2Q9H9Y4 310 aaPredicted RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 FBXO8Q9NRD0 319 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 LSM2Q9Y333 95 aaKnown RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 MRPS18BQ9Y676 258 aaKnown RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 PMF1-BGLAPU3KQ54 211 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 FREM3P0C091 2139 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 PRR23D1E9PI22 279 aaPredicted RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 H3BML4 177 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 J3QRK9 145 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 ZNF701M0R085 212 aaPredicted RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 PLD2O14939 933 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 CBFA2T3O75081 653 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 ITGA10O75578 1167 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 GPANK1O95872 356 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 LIMS3P0CW19 117 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 LIMS4P0CW20 117 aa7.08□□□□□ -1.28
NEK3-207ENST00000617054 PRR23D2P0DMB1 279 aaPredicted RBP7.08□□□□□ -1.28
NEK3-207ENST00000617054 F8A1P23610 371 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms