RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OR13C2Q8NGS9 318 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 RAB3IL1Q8TBN0 382 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ANKRD49Q8WVL7 239 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 DHX58Q96C10 678 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 C10orf90Q96M02 699 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF285Q96NJ3 590 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PANX3Q96QZ0 392 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 LYSMD1Q96S90 227 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 DDOQ99489 341 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PCGF1Q9BSM1 259 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 TRAF4Q9BUZ4 470 aaPredicted RBP3.77□□□□□ -1.81
LINC00540-201ENST00000611481 NTMT1Q9BV86 223 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 RAB11FIP5Q9BXF6 653 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PIGMQ9H3S5 423 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 RMND5AQ9H871 391 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ESM1Q9NQ30 184 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 CDC14AQ9UNH5 594 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 TRAF3IP3Q9Y228 551 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 B3GALT5Q9Y2C3 310 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 MRPS7Q9Y2R9 242 aaKnown RBP3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PLXNB1O43157 2135 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 A0A096LPK6 155 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 A0A0A0MQY5 61 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 IGHV4-61A0A0C4DH41 118 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 A0A0J9YVX5 310 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PVALEFA0A1B0GWK0 134 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 FEZF1A0PJY2 475 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 C16orf97H3BN30 126 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 B4GALT2O60909 372 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PPP1R3DO95685 299 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CD8AP01732 235 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 ERVK-10P10266 1014 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 SKILP12757 684 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 POU2F1P14859 743 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PEBP1P30086 187 aaKnown RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 SLC26A3P40879 764 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 DNASE1L1P49184 302 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PCYT1AP49585 367 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 TPI1P60174 286 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 KCNJ2P63252 427 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 IRX1P78414 480 aaPredicted RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PGGHGQ32M88 737 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 C2CD6Q53TS8 623 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 KPRPQ5T749 579 aaPredicted RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 FRMPD2BQ6IN97 320 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 SPSB3Q6PJ21 355 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF474Q6S9Z5 364 aaPredicted RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 GPR180Q86V85 440 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 IQCF2Q8IXL9 164 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF679Q8IYX0 411 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 GCNT2Q8N0V5 402 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 BBS5Q8N3I7 341 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 EIF1ADQ8N9N8 165 aaKnown RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 OR2L2Q8NH16 312 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 SLC44A1Q8WWI5 657 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 FIG4Q92562 907 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 TAF15Q92804 592 aaKnown RBP eCLIP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 NTAN1Q96AB6 310 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 RNF183Q96D59 192 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 OTUB1Q96FW1 271 aaPredicted RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CDKN2AIPNLQ96HQ2 116 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 VPS35Q96QK1 796 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CPNE1Q99829 537 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CCT7Q99832 543 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 RBM4BQ9BQ04 359 aaKnown RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 FAM173AQ9BQD7 235 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CCM2Q9BSQ5 444 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 DEFB126Q9BYW3 111 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 TSPYL1Q9H0U9 437 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CDC42EP4Q9H3Q1 356 aaKnown RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 MVB12BQ9H7P6 319 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 MAGEF1Q9HAY2 307 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 CRLF2Q9HC73 371 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 FARSBQ9NSD9 589 aaKnown RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 DDX28Q9NUL7 540 aaKnown RBP3.76□□□□□ -1.81
LINC00540-201ENST00000611481 OR14J1Q9UGF5 321 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 ATP6V1HQ9UI12 483 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 KCNG2Q9UJ96 466 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 RCOR1Q9UKL0 485 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 NAALAD2Q9Y3Q0 740 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PPIAL4AQ9Y536 164 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 A3GALT2U3KPV4 340 aa3.76□□□□□ -1.81
LINC00540-201ENST00000611481 PRR14LQ5THK1 2151 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ARPC4-TTLL3A0A0A6YYG9 625 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 A0A1W2PPQ1 181 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 MAGEA13PA6NCF6 341 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 GOLGA6L4A6NEF3 574 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 GOLGA6L9A6NEM1 432 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 FRG2CA6NGY1 282 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 H0Y8G0 127 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 H3BQV1 296 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 L7N2F9 121 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 TIMM23O14925 209 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CTDSPLO15194 276 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 NDUFS4O43181 175 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 UGT1A9O60656 530 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SRPX2O60687 465 aaPredicted RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CTSVO60911 334 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CD48P09326 243 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 EPB41P11171 864 aaKnown RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 213.8 ms