RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ABHD17CQ6PCB6 329 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 TMUB2Q71RG4 321 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 BMP8AQ7Z5Y6 402 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 FCAMRQ8WWV6 532 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 INSM2Q96T92 566 aaPredicted RBP16.9■□□□□ 0.3
UPF1-210ENST00000600689 WASH6PQ9NQA3 447 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 PRDM7Q9NQW5 492 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 ADAM18Q9Y3Q7 739 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 NPFFR2Q9Y5X5 522 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 SELENOFO60613 162 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 TBX19O60806 448 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 ZNF136P52737 540 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 FAM109BQ6ICB4 259 aaPredicted RBP16.9■□□□□ 0.3
UPF1-210ENST00000600689 MTSS1LQ765P7 747 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 OR2A1Q8NGT9 310 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 ZNRF4Q8WWF5 429 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 SHARPINQ9H0F6 387 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 KRCC1Q9NPI7 259 aaPredicted RBP16.9■□□□□ 0.3
UPF1-210ENST00000600689 SPHK1Q9NYA1 384 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 KLHL9Q9P2J3 617 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 APOBEC3BQ9UH17 382 aaKnown RBP16.9■□□□□ 0.3
UPF1-210ENST00000600689 FAM74A7A6NL05 159 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 ARL6IP5O75915 188 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 ZNF3P17036 446 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 NT5EP21589 574 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 S100A11P31949 105 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 LRRC37A5PQ49AS3 106 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 FAM74A3Q4VXF1 159 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 DCAF12L2Q5VW00 463 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 SLC48A1Q6P1K1 146 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 RANBP3LQ86VV4 465 aaPredicted RBP16.89■□□□□ 0.29
UPF1-210ENST00000600689 HAVCR2Q8TDQ0 301 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 CMC2Q9NRP2 79 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 ABRACLQ9P1F3 81 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 KIF25Q9UIL4 384 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 ST6GALNAC2Q9UJ37 374 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 TRAPPC13A5PLN9 417 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 C4orf47A7E2U8 309 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 ADRB3P13945 408 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 AKR1C2P52895 323 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 AKR1C1Q04828 323 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 PRDX1Q06830 199 aaKnown RBP16.89■□□□□ 0.29
UPF1-210ENST00000600689 ATXN7L3Q14CW9 347 aaPredicted RBP16.89■□□□□ 0.29
UPF1-210ENST00000600689 FAM78AQ5JUQ0 283 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 TNFAIP8L1Q8WVP5 186 aa16.89■□□□□ 0.29
UPF1-210ENST00000600689 DVL3Q92997 716 aaPredicted RBP16.89■□□□□ 0.29
UPF1-210ENST00000600689 A0A1B0GTH9 108 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 IGLON5A6NGN9 336 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 H0YC42 278 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 HNRNPA1P09651 372 aaKnown RBP eCLIP16.88■□□□□ 0.29
UPF1-210ENST00000600689 FBXO45P0C2W1 286 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 PRKAR1BP31321 381 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 SEC61A1P61619 476 aaKnown RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 SORDQ00796 357 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 LGALS3BPQ08380 585 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 ETFBKMTQ8IXQ9 262 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 NRSN1Q8IZ57 195 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 LNX2Q8N448 690 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 CXorf40AQ8TE69 158 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 SLC25A38Q96DW6 304 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 EPHX3Q9H6B9 360 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 MEPEQ9NQ76 525 aaPredicted RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 PCDHGA9Q9Y5G4 932 aaKnown RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 CACNA1IQ9P0X4 2223 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 EGFP01133 1207 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 SRMP19623 302 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 CDK2P24941 298 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 H2BFSP57053 126 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 SIRPAP78324 504 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 GAB4Q2WGN9 574 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 FBXO46Q6PJ61 603 aaPredicted RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 GLDNQ6ZMI3 551 aaPredicted RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 OR4D10Q8NGI6 311 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 BRIX1Q8TDN6 353 aaKnown RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 KCNK15Q9H427 330 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 IL21RQ9HBE5 538 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 DOCK9Q9BZ29 2069 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 LRRC72A6NJI9 287 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 PIN1P1O15428 100 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 CLEC3AO75596 197 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 RCBTB2O95199 551 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 RASGRP1O95267 797 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 ADH1CP00326 375 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 RLN2P04090 185 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 MAS1P04201 325 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 GAAP10253 952 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 ACHEP22303 614 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 GALP22466 123 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 RPL4P36578 427 aaKnown RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 RPS27P42677 84 aaKnown RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 DYRK1AQ13627 763 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 MLC1Q15049 377 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 MLF2Q15773 248 aaPredicted RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 UBE2NLQ5JXB2 153 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 ZNF514Q96K75 400 aaPredicted RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 NPDC1Q9NQX5 325 aaPredicted RBP16.88■□□□□ 0.29
UPF1-210ENST00000600689 WBP1LQ9NX94 342 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 SIGLEC7Q9Y286 467 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 CA5BQ9Y2D0 317 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 SLC35A3Q9Y2D2 325 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms