RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ATP4BP51164 291 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 IRX1P78414 480 aaPredicted RBP13.3□□□□□ -0.28
LIG1-215ENST00000597901 SLC17A1Q14916 467 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 PPA1Q15181 289 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 STK11Q15831 433 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 Q5PR19 223 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 TIMM23BQ5SRD1 257 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 PAQR6Q6TCH4 344 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 SEZ6L2Q6UXD5 910 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 ATG4DQ86TL0 474 aaPredicted RBP13.3□□□□□ -0.28
LIG1-215ENST00000597901 SERPINA11Q86U17 422 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 BIVMQ86UB2 503 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 TMEM99Q8N816 258 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 PERPQ96FX8 193 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 POM121Q96HA1 1249 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 C18orf12Q96KH6 178 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 RSPO3Q9BXY4 272 aaPredicted RBP13.3□□□□□ -0.28
LIG1-215ENST00000597901 VAPAQ9P0L0 249 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 FLVCR1Q9Y5Y0 555 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 GMEB1Q9Y692 573 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 A0A1W2PP18 115 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 CIB4A0PJX0 185 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 OR5H1A6NKK0 313 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 A8MVM7 634 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 CLOCKO15516 846 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 AKR7A3O95154 331 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 GPIP06744 558 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 ETS2P15036 469 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 H2AFXP16104 143 aaPredicted RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 PPIBP23284 216 aaKnown RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 FOXG1P55316 489 aaPredicted RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 HOXC5Q00444 222 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 FAPQ12884 760 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 SQLEQ14534 574 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 OR7A5Q15622 319 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 OTUD3Q5T2D3 398 aaPredicted RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 SSX8Q7RTT4 187 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 YTHDF3Q7Z739 585 aaKnown RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 C10orf111Q8N326 155 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 ZIC4Q8N9L1 334 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 BBS10Q8TAM1 723 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 TMEM171Q8WVE6 324 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 NEUROG1Q92886 237 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 SLC35B4Q969S0 331 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 THOC1Q96FV9 657 aaKnown RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 MUS81Q96NY9 551 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 GSX2Q9BZM3 304 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 ARGLU1Q9NWB6 273 aaPredicted RBP13.29□□□□□ -0.28
LIG1-215ENST00000597901 ASB6Q9NWX5 421 aa13.29□□□□□ -0.28
LIG1-215ENST00000597901 TRBV5-3A0A0A0MS03 114 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 CCT8L1PA6NM43 557 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 FAM171A2A8MVW0 826 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 FRS3O43559 492 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 TMCC2O75069 709 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 INHBBP09529 407 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 ARAFP10398 606 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 PAX1P15863 534 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 GPX2P18283 190 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 PTH2RP49190 550 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 CDK6Q00534 326 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 BSPH1Q075Z2 132 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 GABRA6Q16445 453 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 GCNT6Q5T4J0 391 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 TMEM225Q6GV28 225 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 REEP3Q6NUK4 255 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 DLEU7Q6UYE1 221 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 OR52E4Q8NGH9 312 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 NFKBIDQ8NI38 313 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 C3orf49Q96BT1 292 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 Q96MF0 132 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 SMR3AQ99954 134 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 SF3B5Q9BWJ5 86 aaKnown RBP13.28□□□□□ -0.28
LIG1-215ENST00000597901 TAPBPLQ9BX59 468 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 RABEP2Q9H5N1 569 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 ZNF701Q9NV72 531 aaPredicted RBP13.28□□□□□ -0.28
LIG1-215ENST00000597901 LAMP3Q9UQV4 416 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 SLC9A8Q9Y2E8 581 aa13.28□□□□□ -0.28
LIG1-215ENST00000597901 MAP1AP78559 2803 aaPredicted RBP13.27□□□□□ -0.28
LIG1-215ENST00000597901 AQP7P3A6NL99 342 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 EVPLLA8MZ36 301 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 PDLIM1O00151 329 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 NPIPB7O75200 414 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 RAD51DO75771 328 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 PRKAR1BP31321 381 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 ZNF672Q499Z4 452 aaPredicted RBP13.27□□□□□ -0.29
LIG1-215ENST00000597901 RUNDC3AQ59EK9 446 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 TSPO2Q5TGU0 170 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 C1orf140Q5VVS0 124 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 OR7E24Q6IFN5 339 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 CASP12Q6UXS9 341 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 OR9K2Q8NGE7 335 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 STK35Q8TDR2 534 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 SMAP2Q8WU79 429 aaPredicted RBP13.27□□□□□ -0.29
LIG1-215ENST00000597901 STON2Q8WXE9 905 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 IKZF5Q9H5V7 419 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 CXorf56Q9H5V9 222 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 PIF1Q9H611 641 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 SLC7A10Q9NS82 523 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 ADPRHL2Q9NX46 363 aa13.27□□□□□ -0.29
LIG1-215ENST00000597901 TAS2R16Q9NYV7 291 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms