RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BAIAP2Q9UQB8 552 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 CORINQ9Y5Q5 1042 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 OR2M5A3KFT3 312 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 PINLYPA6NC86 204 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 B4DXG7 233 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 MPZL2O60487 215 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 NPIPB7O75200 414 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 PTP4A3O75365 173 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 HMGN1P05114 100 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 RFPL3SP0C7P2 107 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 PTNP21246 168 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 RPS5P46782 204 aaKnown RBP13.77□□□□□ -0.21
TRIM28-209ENST00000597423 GIPRP48546 466 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 EGR4Q05215 589 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 ZNF169Q14929 603 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-209ENST00000597423 SYT14P1Q58G82 188 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 PDSS1Q5T2R2 415 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 SLC27A4Q6P1M0 643 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 CASP12Q6UXS9 341 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 ZNF620Q6ZNG0 422 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 YRDCQ86U90 279 aaKnown RBP13.77□□□□□ -0.21
TRIM28-209ENST00000597423 FAM109AQ8N4B1 249 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 EXPH5Q8NEV8 1989 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 OR51A7Q8NH64 312 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 FANK1Q8TC84 345 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 TAAR8Q969N4 342 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 SLC25A36Q96CQ1 311 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 ZNF570Q96NI8 536 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 SLC38A2Q96QD8 506 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 ARHGAP9Q9BRR9 750 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 SPTBN4Q9H254 2564 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 ACKR4Q9NPB9 350 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 TBC1D23Q9NUY8 699 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 IMPAD1Q9NX62 359 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 NDRG4Q9ULP0 352 aaKnown RBP13.77□□□□□ -0.21
TRIM28-209ENST00000597423 TRAPPC4Q9Y296 219 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 HRH3Q9Y5N1 445 aa13.77□□□□□ -0.21
TRIM28-209ENST00000597423 DOCK10Q96BY6 2186 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 ZAR1LA6NP61 321 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 CDC42EP2O14613 210 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 NDUFB2O95178 105 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 SOX14O95416 240 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 TCEA1P23193 301 aaKnown RBP13.76□□□□□ -0.21
TRIM28-209ENST00000597423 MYF6P23409 242 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 SLC6A6P31641 620 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 GGT2P36268 569 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 POLR2IP36954 125 aaKnown RBP13.76□□□□□ -0.21
TRIM28-209ENST00000597423 SLC35A1P78382 337 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 GINS1Q14691 196 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 TMEM176BQ3YBM2 270 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-209ENST00000597423 THAP5Q7Z6K1 395 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 MEX3DQ86XN8 651 aaKnown RBP13.76□□□□□ -0.21
TRIM28-209ENST00000597423 MARVELD2Q8N4S9 558 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 TMEM251Q8N6I4 163 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 SCAIQ8N9R8 606 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 OR2T33Q8NG76 320 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 OR5M1Q8NGP8 315 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 OR13C2Q8NGS9 318 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 TRUB1Q8WWH5 349 aaKnown RBP13.76□□□□□ -0.21
TRIM28-209ENST00000597423 CNBD2Q96M20 576 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 MUS81Q96NY9 551 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 TNFRSF13CQ96RJ3 184 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 PITX2Q99697 317 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 TSSK6Q9BXA6 273 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 ADNPQ9H2P0 1102 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 ZNF703Q9H7S9 590 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-209ENST00000597423 SIGLEC7Q9Y286 467 aa13.76□□□□□ -0.21
TRIM28-209ENST00000597423 MED19A0JLT2 244 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 FAM166BA8MTA8 275 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 SHISA8B8ZZ34 492 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 H3BML4 177 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 BLOC1S5-TXNDC5H3BN57 136 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 EFNA2O43921 213 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 BGLAPP02818 100 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 PEPDP12955 493 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 RPL4P36578 427 aaKnown RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 CSNK2A1P68400 391 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 CDK5Q00535 292 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 PMS2P3Q13401 168 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 PDK3Q15120 406 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 INAQ16352 499 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 WIPI1Q5MNZ9 446 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 ZNF691Q5VV52 312 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 SLX4IPQ5VYV7 408 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 RPUSD3Q6P087 351 aaKnown RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 DPY19L2P2Q6ZN68 376 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 Q6ZS92 163 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 USP51Q70EK9 711 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 SLC46A3Q7Z3Q1 461 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 NANOGNBQ7Z5D8 188 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 OR5J2Q8NH18 312 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 ABHD17AQ96GS6 310 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 SAMD8Q96LT4 415 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 OR5B2Q96R09 309 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 IFT27Q9BW83 186 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 OR11A1Q9GZK7 315 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 OR52D1Q9H346 318 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 LDAHQ9H6V9 325 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 EGLN3Q9H6Z9 239 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 SLC25A19Q9HC21 320 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms