RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 H3F3AP84243 136 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 FAM27E3Q08E93 113 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 ELOA3BQ3SY89 546 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 ALG10BQ5I7T1 473 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 FAM91A1Q658Y4 838 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 NUFIP2Q7Z417 695 aaKnown RBP12.96□□□□□ -0.34
VRK3-206ENST00000594090 ANKS4BQ8N8V4 417 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 ELOA3Q8NG57 546 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 OR4D11Q8NGI4 311 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 VANGL1Q8TAA9 524 aaPredicted RBP12.96□□□□□ -0.34
VRK3-206ENST00000594090 PIGXQ8TBF5 258 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 STK35Q8TDR2 534 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 ZNF300Q96RE9 604 aaPredicted RBP12.96□□□□□ -0.34
VRK3-206ENST00000594090 ELOVL5Q9NYP7 299 aa12.96□□□□□ -0.34
VRK3-206ENST00000594090 GMPR2Q9P2T1 348 aaKnown RBP12.96□□□□□ -0.34
VRK3-206ENST00000594090 PKDREJQ9NTG1 2253 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 IGKV3D-15A0A087WSY6 115 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 A0A0B4J2E0 115 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 A0A1B0GX12 115 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 ZNF716A6NP11 495 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 EIF1BO60739 113 aaKnown RBP12.95□□□□□ -0.34
VRK3-206ENST00000594090 FMO6PO60774 539 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 RAMP1O60894 148 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 AHSA1O95433 338 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 FAM107AO95990 144 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 PNMTP11086 282 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 POU2F1P14859 743 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 CCKARP32238 428 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 TLE4Q04727 773 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 EGR4Q05215 589 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 LIPEQ05469 1076 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 CEACAM7Q14002 265 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 PDK3Q15120 406 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 OR1Q1Q15612 314 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 OR7A5Q15622 319 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 NPTX1Q15818 432 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 EXOC3L2Q2M3D2 409 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 LRRC23Q53EV4 343 aaPredicted RBP12.95□□□□□ -0.34
VRK3-206ENST00000594090 C1orf140Q5VVS0 124 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 ULK3Q6PHR2 472 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 PAQR6Q6TCH4 344 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 TFAP2EQ6VUC0 442 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 STK32CQ86UX6 486 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 OR6T1Q8NGN1 323 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 FAM222BQ8WU58 562 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 SLC38A4Q969I6 547 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 MCHR1Q99705 422 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 ALG2Q9H553 416 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 TMEM27Q9HBJ8 222 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 SELENONQ9NZV5 590 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 ABCD2Q9UBJ2 740 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 UNC79Q9P2D8 2635 aa12.95□□□□□ -0.34
VRK3-206ENST00000594090 NDUFAB1O14561 156 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 UGT2B10P36537 528 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 SLC16A1P53985 500 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 GKAP1Q5VSY0 366 aaPredicted RBP12.94□□□□□ -0.34
VRK3-206ENST00000594090 ZNF613Q6PF04 617 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 BEND4Q6ZU67 534 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 RBM45Q8IUH3 476 aaKnown RBP12.94□□□□□ -0.34
VRK3-206ENST00000594090 CCDC103Q8IW40 242 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 LINC01560Q8TB33 94 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 PROX1Q92786 737 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 SLC47A1Q96FL8 570 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 NAA11Q9BSU3 229 aaPredicted RBP12.94□□□□□ -0.34
VRK3-206ENST00000594090 PTDSS2Q9BVG9 487 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 TAPBPLQ9BX59 468 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 EMC3Q9P0I2 261 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 BAG5Q9UL15 447 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 SLC9A8Q9Y2E8 581 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 FBN2P35556 2912 aa12.94□□□□□ -0.34
VRK3-206ENST00000594090 MPDZO75970 2070 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 IGKV1D-42A0A075B6H8 117 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 A0A087WUJ7 227 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 SH3D21A4FU49 640 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 IFNA14P01570 189 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 KDELR2P33947 212 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 RPS5P46782 204 aaKnown RBP12.93□□□□□ -0.34
VRK3-206ENST00000594090 GSK3BP49841 420 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 CDH12P55289 794 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 PSME3P61289 254 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 CYBRD1Q53TN4 286 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 ENTPD8Q5MY95 495 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 OTUD3Q5T2D3 398 aaPredicted RBP12.93□□□□□ -0.34
VRK3-206ENST00000594090 SWT1Q5T5J6 900 aaKnown RBP12.93□□□□□ -0.34
VRK3-206ENST00000594090 C5orf46Q6UWT4 87 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 CARM1Q86X55 608 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 RNF217Q8TC41 542 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 ZNF775Q96BV0 537 aaPredicted RBP12.93□□□□□ -0.34
VRK3-206ENST00000594090 PCDHAC1Q9H158 963 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 MCCC2Q9HCC0 563 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 SPAG4Q9NPE6 437 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 ARL8BQ9NVJ2 186 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 ADPRHL2Q9NX46 363 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 TAGLN3Q9UI15 199 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 ADAM21Q9UKJ8 722 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 TESMINQ9Y4I5 508 aa12.93□□□□□ -0.34
VRK3-206ENST00000594090 AQP7P3A6NL99 342 aa12.92□□□□□ -0.34
VRK3-206ENST00000594090 CPSF4LA6NMK7 179 aaKnown RBP12.92□□□□□ -0.34
VRK3-206ENST00000594090 FTCDNL1E5RQL4 147 aa12.92□□□□□ -0.34
VRK3-206ENST00000594090 C16orf97H3BN30 126 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms